Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21215581 .. 21216258

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAGCCGCCCACACCCAACCAATATATTTGGACGTTTCCCTCCATATTAGTAGCCGACTCACTGGCAGAAGTCCACTACTCCGCTTCCCTCCCAAACACCGAAGCAAGGAAAACATCTCACGCAAAAACCCTGAACCCGCGCCTTCCTCCCAACCATTTCTCTTTCTCCAGGCGGCGCCGCCACCGTTTGACGCCCACTACAGCCACCGTAATGTCGGCCTCAATCTTCGAAGACGGCTTCTCCTCTGACCGGCTCTTCAACCAGGGCTACTCCTACACATACGATGACGTCATCTTCCTCCCTCACTACATCGACTTCCCCACCGACTCCGTCCATCTAGCCTCCAACCTCAGCCGCCGCATCCCTCTCTCGATTCCCTGCGTCTCGTCCCCGATGGACACCGTCACCGAGTCCCACATGGCCATTTCGATGGCCGCACTCGGCGGCATAGGCATCATCCACTCCAACTTGACGTCGTCCGAGCAAGCCCACATGGTCCGGTCCGTCAAGTCCCGCCGGGTCCCGCTTCTTTCGAACCCCGTCTTCAAATCCCCAAGATCGATCGAATCCAATCTGACGACGTTTTCGACGCTTCCAATCCCTATGTTCTGGTTACTGAGAGTGGCAGCCCCAATTCGAAGCTTTTGGGGTACGTGGCGGGCAAGGATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

226

Amino Acids

25.29

Weight (kDa)

10.14

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	93 - 173	4.4e-28	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	294, 479
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	1 cut(s)	142
AcoI	YGGCCR	2 cut(s)	423, 435
AcyI	GRCGYC	4 cut(s)	178, 194, 291, 476
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	2 cut(s)	108, 252
AgsI	TTSAA	2 cut(s)	262, 550
AjnI	CCWGG	2 cut(s)	170, 264
AluBI	AGCT	1 cut(s)	645
AluI	AGCT	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	391
AoxI	GGCC	3 cut(s)	219, 423, 435
ApeKI	GCWGC	2 cut(s)	4, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
AspLEI	GCGC	2 cut(s)	144, 180
AspS9I	GGNCC	3 cut(s)	499, 504, 523
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	400
AsuII	TTCGAA	3 cut(s)	231, 536, 640
AvaII	GGWCC	3 cut(s)	499, 504, 523
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	177
BbsI	GAAGAC	2 cut(s)	240, 538
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	16, 641
BccI	CCATC	3 cut(s)	345, 391, 427
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	172, 266
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	181
BisI	GCNGC	9 cut(s)	5, 8, 176, 181, 358, 361, 438, 448, 630
BlsI	GCNGC	9 cut(s)	6, 9, 177, 182, 359, 362, 439, 449, 631
Bme1390I	CCNGG	3 cut(s)	172, 266, 521
Bme18I	GGWCC	3 cut(s)	499, 504, 523
BmgT120I	GGNCC	3 cut(s)	499, 504, 523
BmiI	GGNNCC	3 cut(s)	179, 524, 525
BmrFI	CCNGG	3 cut(s)	172, 266, 521
BmsI	GCATC	2 cut(s)	372, 465
BpiI	GAAGAC	2 cut(s)	240, 538
BpmI	CTGGAG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu14I	TTCGAA	3 cut(s)	231, 536, 640
BpuMI	CCSGG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	657
BsaHI	GRCGYC	4 cut(s)	178, 194, 291, 476
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 252
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	172, 266
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	363, 459
BseLI	CCNNNNNNNGG	2 cut(s)	108, 252
BseMII	CTCAG	2 cut(s)	367, 611
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	16, 641
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	221, 425, 437
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	563
BsiEI	CGRYCG	1 cut(s)	567
BsiSI	CCGG	3 cut(s)	253, 502, 520
BslFI	GGGAC	4 cut(s)	376, 400, 499, 509
BslI	CCNNNNNNNGG	2 cut(s)	108, 252
BsmAI	GTCTC	1 cut(s)	391
BsmBI	CGTCTC	1 cut(s)	391
BsmFI	GGGAC	4 cut(s)	376, 400, 499, 509
BsnI	GGCC	3 cut(s)	221, 425, 437
Bsp119I	TTCGAA	3 cut(s)	231, 536, 640
Bsp143I	GATC	2 cut(s)	560, 564
BspANI	GGCC	3 cut(s)	221, 425, 437
BspCNI	CTCAG	2 cut(s)	366, 612
BspDI	ATCGAT	1 cut(s)	563
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	3 cut(s)	179, 524, 525
BspQI	GCTCTTC	1 cut(s)	263
BspT104I	TTCGAA	3 cut(s)	231, 536, 640
BspT107I	GGYRCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	560, 564
BssNI	GRCGYC	4 cut(s)	178, 194, 291, 476
Bst2UI	CCWGG	2 cut(s)	172, 266
Bst4CI	ACNGT	3 cut(s)	188, 211, 406
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	4 cut(s)	178, 194, 291, 476
BstBAI	YACGTR	1 cut(s)	657
BstBI	TTCGAA	3 cut(s)	231, 536, 640
BstC8I	GCNNGC	2 cut(s)	489, 663
BstDEI	CTNAG	2 cut(s)	353, 620
BstF5I	GGATG	2 cut(s)	363, 459
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	144, 180
BstKTI	GATC	2 cut(s)	563, 567
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	2 cut(s)	560, 564
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	2 cut(s)	172, 266
BstSCI	CCNGG	3 cut(s)	170, 264, 519
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	16, 641
BstV2I	GAAGAC	2 cut(s)	240, 538
BstXI	CCANNNNNNTGG	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	221, 425, 437
BsuTUI	ATCGAT	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	363, 459
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	489, 663
CfoI	GCGC	2 cut(s)	144, 180
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	499, 504, 523
ClaI	ATCGAT	1 cut(s)	563
CpoI	CGGWCCG	1 cut(s)	504
CseI	GACGC	3 cut(s)	202, 373, 601
Csp6I	GTAC	1 cut(s)	654
CspI	CGGWCCG	1 cut(s)	504
CviAII	CATG	2 cut(s)	421, 496
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	2 cut(s)	353, 620
DinI	GGCGCC	1 cut(s)	179
DpnI	GATC	2 cut(s)	562, 566
DpnII	GATC	2 cut(s)	560, 564
EaeI	YGGCCR	2 cut(s)	423, 435
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco47I	GGWCC	3 cut(s)	499, 504, 523
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	170, 264
EgeI	GGCGCC	1 cut(s)	179
EheI	GGCGCC	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	391
FaeI	CATG	2 cut(s)	424, 499
FaiI	YATR	7 cut(s)	27, 47, 283, 422, 452, 497, 608
FaqI	GGGAC	4 cut(s)	376, 400, 499, 509
FatI	CATG	2 cut(s)	420, 495
FauI	CCCGC	4 cut(s)	147, 524, 534, 654
Fnu4HI	GCNGC	9 cut(s)	5, 8, 176, 181, 358, 361, 438, 448, 630
FokI	GGATG	2 cut(s)	350, 446
Fsp4HI	GCNGC	9 cut(s)	5, 8, 176, 181, 358, 361, 438, 448, 630
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	2 cut(s)	143, 179
GluI	GCNGC	9 cut(s)	5, 8, 176, 181, 358, 361, 438, 448, 630
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	221, 425, 437
HapII	CCGG	3 cut(s)	253, 502, 520
HgaI	GACGC	3 cut(s)	202, 373, 601
HhaI	GCGC	2 cut(s)	144, 180
Hin1I	GRCGYC	4 cut(s)	178, 194, 291, 476
Hin1II	CATG	2 cut(s)	424, 499
Hin6I	GCGC	2 cut(s)	142, 178
HinP1I	GCGC	2 cut(s)	142, 178
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	5 cut(s)	59, 329, 376, 413, 569
HpaII	CCGG	3 cut(s)	253, 502, 520
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	3 cut(s)	250, 484, 579
Hpy188III	TCNNGA	1 cut(s)	373
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	3 cut(s)	481, 586, 595
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	3 cut(s)	188, 211, 406
HpyCH4IV	ACGT	5 cut(s)	35, 291, 476, 584, 656
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	353, 620
HpySE526I	ACGT	5 cut(s)	35, 291, 476, 584, 656
Hsp92I	GRCGYC	4 cut(s)	178, 194, 291, 476
Hsp92II	CATG	2 cut(s)	424, 499
HspAI	GCGC	2 cut(s)	142, 178
KasI	GGCGCC	1 cut(s)	177
KflI	GGGWCCC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	560, 564
LguI	GCTCTTC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	16, 641
LweI	GCATC	2 cut(s)	372, 465
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	5 cut(s)	35, 291, 476, 584, 656
MaeIII	GTNAC	2 cut(s)	406, 615
MalI	GATC	2 cut(s)	562, 566
MboI	GATC	2 cut(s)	560, 564
MboII	GAAGA	5 cut(s)	220, 245, 250, 289, 538
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	178
MlyI	GAGTC	3 cut(s)	53, 323, 422
MmeI	TCCRAC	2 cut(s)	372, 492
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MslI	CAYNNNNRTG	2 cut(s)	212, 431
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	3 cut(s)	253, 502, 520
MspR9I	CCNGG	3 cut(s)	172, 266, 521
MvaI	CCWGG	2 cut(s)	172, 266
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	453
NarI	GGCGCC	1 cut(s)	178
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	2 cut(s)	560, 564
NlaIII	CATG	2 cut(s)	424, 499
NlaIV	GGNNCC	3 cut(s)	179, 524, 525
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	406
NspV	TTCGAA	3 cut(s)	231, 536, 640
PciSI	GCTCTTC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	376, 569
PflFI	GACNNNGTC	3 cut(s)	332, 404, 478
PkrI	GCNGC	9 cut(s)	6, 9, 177, 182, 359, 362, 439, 449, 631
Ple19I	CGATCG	1 cut(s)	567
PleI	GAGTC	3 cut(s)	53, 323, 421
PluTI	GGCGCC	1 cut(s)	181
PpsI	GAGTC	3 cut(s)	53, 323, 421
Ppu21I	YACGTR	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	170, 264
PspGI	CCWGG	2 cut(s)	170, 264
PspN4I	GGNNCC	3 cut(s)	179, 524, 525
PspPI	GGNCC	3 cut(s)	499, 504, 523
PspPPI	RGGWCCY	1 cut(s)	523
PsyI	GACNNNGTC	3 cut(s)	332, 404, 478
PvuI	CGATCG	1 cut(s)	567
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	2 cut(s)	212, 431
Rsr2I	CGGWCCG	1 cut(s)	504
RsrII	CGGWCCG	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	263
SatI	GCNGC	9 cut(s)	5, 8, 176, 181, 358, 361, 438, 448, 630
Sau3AI	GATC	2 cut(s)	560, 564
Sau96I	GGNCC	3 cut(s)	499, 504, 523
SchI	GAGTC	3 cut(s)	53, 323, 422
ScrFI	CCNGG	3 cut(s)	172, 266, 521
SetI	ASST	7 cut(s)	38, 294, 354, 479, 587, 647, 659
SfaNI	GCATC	2 cut(s)	372, 465
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	179
SfuI	TTCGAA	3 cut(s)	231, 536, 640
SinI	GGWCC	3 cut(s)	499, 504, 523
SmiMI	CAYNNNNRTG	2 cut(s)	212, 431
Sse9I	AATT	1 cut(s)	636
SspDI	GGCGCC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	170, 264, 519
TaaI	ACNGT	3 cut(s)	188, 211, 406
TaiI	ACGT	5 cut(s)	38, 294, 479, 587, 659
TaqI	TCGA	9 cut(s)	231, 315, 374, 431, 536, 563, 567, 590, 640
TasI	AATT	1 cut(s)	636
TauI	GCSGC	7 cut(s)	10, 178, 183, 360, 363, 440, 450
TfiI	GAWTC	2 cut(s)	376, 569
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	4, 629
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	2 cut(s)	322, 496
TspRI	CASTG	1 cut(s)	69
Tth111I	GACNNNGTC	3 cut(s)	332, 404, 478
VpaK11BI	GGWCC	3 cut(s)	499, 504, 523
XspI	CTAG	1 cut(s)	341
ZraI	GACGTC	2 cut(s)	292, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.