Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21604734 .. 21605730

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCAAAAACCCAGTTCGAGTTCTTGTCACTGGTGCCGCTAATTTTTTTAATAAGGGTCAACTCCATGAAATGATGTTAAATACCGAGTTCATCACCACTGTGCAGCAGCGCTGTGCAGCCATTATTAAGGCTCGGAAGCTATCAAGTGCATTATCTGCTGCAAGTTCCGTTTGTGATCACATACGTGATTGGGTTCTTGGGACTCCTAAGGGGACATGGGTTTCAATGGGAGTGTACTCTTATGGTTCTTATGGAATTCAGAAAGGCCTAATTTACTGCTTCCCTGTTACATGCGAGAAAGGACAATGGTCAATTGTGCAGGGACTCAAGAGTGACGAGTTCTCGAGGGGGAAGTTGGATGCAACTGCAAAAGAGCTCATTGAGGAGAAATCGTTGGCCTACTCATGTCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

140

Amino Acids

15.3

Weight (kDa)

9.01

Isoelectric Point (pI)

20.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_C	PF02866	16 - 132	2.7e-22	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	239
AfeI	AGCGCT	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	228
AleI	CACNNNNGTG	2 cut(s)	101, 186
AluBI	AGCT	2 cut(s)	142, 379
AluI	AGCT	2 cut(s)	142, 379
Alw21I	GWGCWC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	3 cut(s)	3, 268, 399
ApeKI	GCWGC	4 cut(s)	106, 109, 119, 161
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	118, 121, 131, 148
BclI	TGATCA	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	5 cut(s)	39, 107, 110, 120, 162
BlsI	GCNGC	5 cut(s)	40, 108, 111, 121, 163
BmeT110I	CYCGRG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bse1I	ACTGG	2 cut(s)	14, 37
Bse21I	CCTNAGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	14, 37
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	4 cut(s)	118, 121, 131, 148
BsgI	GTGCAG	3 cut(s)	125, 138, 341
BshFI	GGCC	3 cut(s)	5, 270, 401
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	346
BslFI	GGGAC	3 cut(s)	217, 229, 339
BsmFI	GGGAC	3 cut(s)	217, 229, 339
BsnI	GGCC	3 cut(s)	5, 270, 401
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	5, 270, 401
BspLI	GGNNCC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	14, 37
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	297
BstPAI	GACNNNNGTC	1 cut(s)	310
BstV1I	GCAGC	4 cut(s)	118, 121, 131, 148
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	5, 270, 401
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	30, 99
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	68, 219, 294, 408
CviJI	RGCY	7 cut(s)	5, 122, 134, 142, 270, 379, 401
CviKI_1	RGCY	7 cut(s)	5, 122, 134, 142, 270, 379, 401
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	379
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	4 cut(s)	71, 222, 297, 411
FaiI	YATR	7 cut(s)	69, 185, 220, 246, 255, 295, 409
FaqI	GGGAC	3 cut(s)	217, 229, 339
FatI	CATG	4 cut(s)	67, 218, 293, 407
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	5 cut(s)	39, 107, 110, 120, 162
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	39, 107, 110, 120, 162
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	5 cut(s)	39, 107, 110, 120, 162
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	5, 270, 401
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	71, 222, 297, 411
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	205, 327
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	62, 238
Hpy188I	TCNGA	2 cut(s)	138, 264
Hpy188III	TCNNGA	2 cut(s)	331, 346
Hpy8I	GTNNAC	2 cut(s)	62, 238
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	7 cut(s)	106, 119, 152, 164, 322, 365, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	71, 222, 297, 411
HspAI	GCGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	18, 27, 300, 308
Lsp1109I	GCAGC	4 cut(s)	118, 121, 131, 148
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	28, 289, 335
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	43, 258, 273, 315, 415
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	199, 321
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	342, 379
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	51, 80, 129, 414
MslI	CAYNNNNRTG	2 cut(s)	101, 186
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	71, 222, 297, 411
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	28, 335
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	2 cut(s)	101, 186
PaeR7I	CTCGAG	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	40, 108, 111, 121, 163
PleI	GAGTC	2 cut(s)	199, 321
PpsI	GAGTC	2 cut(s)	199, 321
Ppu21I	YACGTR	1 cut(s)	188
PshAI	GACNNNNGTC	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	101, 186
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	51, 80, 129, 414
SatI	GCNGC	5 cut(s)	39, 107, 110, 120, 162
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	199, 321
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	3 cut(s)	144, 190, 381
SfaNI	GCATC	1 cut(s)	352
Sfr274I	CTCGAG	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	101, 186
SmlI	CTYRAG	2 cut(s)	329, 346
SmoI	CTYRAG	2 cut(s)	329, 346
Sse9I	AATT	5 cut(s)	43, 258, 273, 315, 415
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	19, 347
TasI	AATT	5 cut(s)	43, 258, 273, 315, 415
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	4 cut(s)	51, 80, 129, 414
Tru9I	TTAA	4 cut(s)	51, 80, 129, 414
TscAI	CASTG	2 cut(s)	37, 106
TseFI	GTSAC	2 cut(s)	28, 335
TseI	GCWGC	4 cut(s)	106, 109, 119, 161
Tsp45I	GTSAC	2 cut(s)	28, 335
TspDTI	ATGAA	2 cut(s)	82, 84
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	37, 106
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.