Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21785223 .. 21787507

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGGCGTTCGACAAGATAAAGGTGACCAACCCAATTGTCGAAATGGACGCTTGTCATCTAAATTTACCTTCGTATCAATGGCAAAAGAACTATAAGTTGGTGTTCATTTCAGGTTGGACAATGCCAATATGCATCGGGAGACATGCTTTTGGTGATCGGTCACGAGCAACCGATGCAATCCTAGAAGGACCTGGAAAACTTAAATTGGTTTTTGGTAATTCAGTAGGGATACCTGATGGGCCCAATGAGAAGACAGAGTGGGAGGTTTACAGATTTACTGGCGCTGGAGGCATAGCTTTGTCCATGTATAACACGGACGAGTCTATCCGTGCTTTTGCTGAGGCTTCCATGAACACTGCGTACAAGAAAAAGTGGCCACTTTATCCTAGCACTAAAAATACTATTCTGAAGAAATATGATGGAAGGTATGATGTTATCCTGTTGCCTTGCATCTTTCACCGTGCAATCTTTTCTGTTCATAATTACCCATGTTTCATTATGAGTCGGTATGAGTTTATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

176

Amino Acids

20.07

Weight (kDa)

8.82

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	40 - 143	8.1e-07	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	242, 377
ApaI	GGGCCC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	191, 242, 243
AsuHPI	GGTGA	3 cut(s)	37, 167, 452
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	246
BaeI	ACNNNNGTAYC	2 cut(s)	59, 92
BalI	TGGCCA	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	233, 416
BciT130I	CCWGG	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	185, 390
BfoI	RGCGCY	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	191, 242, 243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	3 cut(s)	144, 166, 462
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	246
BshFI	GGCC	2 cut(s)	244, 379
BsmAI	GTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	244, 379
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	244, 379
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	342
BstEII	GGTNACC	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 291
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	54
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	244, 379
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	191, 242, 243
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	146, 307, 352, 492
CviJI	RGCY	4 cut(s)	244, 299, 347, 379
CviKI_1	RGCY	4 cut(s)	244, 299, 347, 379
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	4 cut(s)	149, 310, 355, 495
FatI	CATG	4 cut(s)	145, 306, 351, 491
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	185, 390
GlaI	GCGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	244, 379
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	149, 310, 355, 495
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	323, 505
HphI	GGTGA	3 cut(s)	37, 167, 452
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	139, 165
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	81, 182, 420
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	135, 179, 453, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 291
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	149, 310, 355, 495
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	99, 180, 207, 249, 267, 273, 455
LweI	GCATC	3 cut(s)	144, 166, 462
MaeI	CTAG	2 cut(s)	185, 390
MaeIII	GTNAC	2 cut(s)	25, 162
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	265, 424
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	5 cut(s)	36, 64, 206, 220, 484
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	332, 514
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	259, 284, 337
Mox20I	TGGCCA	1 cut(s)	379
Mph1103I	ATGCAT	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	176, 291
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	149, 310, 355, 495
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	25, 162
NsiI	ATGCAT	1 cut(s)	137
NspI	RCATGY	1 cut(s)	149
PleI	GAGTC	2 cut(s)	331, 513
PpsI	GAGTC	2 cut(s)	331, 513
PpuMI	RGGWCCY	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	244
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	191, 242, 243
PspPPI	RGGWCCY	1 cut(s)	191
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	191, 242, 243
SchI	GAGTC	2 cut(s)	332, 514
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	27, 73, 118, 196, 238, 270, 301, 431
SfaNI	GCATC	3 cut(s)	144, 166, 462
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	5 cut(s)	36, 64, 206, 220, 484
SspMI	CTAG	2 cut(s)	185, 390
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	12, 42
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	5 cut(s)	36, 64, 206, 220, 484
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	2 cut(s)	25, 162
Tsp45I	GTSAC	2 cut(s)	25, 162
TspDTI	ATGAA	4 cut(s)	97, 368, 470, 487
TspGWI	ACGGA	2 cut(s)	320, 332
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	2 cut(s)	185, 390
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.