Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21990806 .. 21991783

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTGCACAGTGATGTTACAACAGTGTTGTAATCGTCTGCTCTCTCTCTCCGCCGCGACCGCCGCCAGCCATGCCTCCTGTCATCTAACTATCTATCCTCTCCAAACCACCACCGATTTAATCCCGAGATTCTGCAGTATTTTCCAAATAGATCTTATTGAGTGTCAGATTTTACTCACAGACCCGCCTCTTAATCCTTCGAAGAACCGTGAAAAAATGGTTGAGACCATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

79

Amino Acids

8.78

Weight (kDa)

6.0

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	51, 54, 60, 63, 185
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	133
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	54, 63
BlsI	GCNGC	2 cut(s)	55, 64
BmeT110I	CYCGRG	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	5 cut(s)	51, 54, 60, 63, 185
BspFNI	CGCG	1 cut(s)	56
BspMAI	CTGCAG	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	218
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	10, 24, 209
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	151
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 62, 71
BstSFI	CTRYAG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	15, 29
Cac8I	GCNNGC	1 cut(s)	67
CviAII	CATG	2 cut(s)	71, 229
CviJI	RGCY	1 cut(s)	69
CviKI_1	RGCY	1 cut(s)	69
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	124
FaeI	CATG	2 cut(s)	74, 232
FaiI	YATR	2 cut(s)	72, 230
FatI	CATG	2 cut(s)	70, 228
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	54, 63
Fsp4HI	GCNGC	2 cut(s)	54, 63
GluI	GCNGC	2 cut(s)	54, 63
Hin1II	CATG	2 cut(s)	74, 232
HinfI	GANTC	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	10, 24, 209
HpyCH4V	TGCA	2 cut(s)	6, 135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 62, 71
Hsp92II	CATG	2 cut(s)	74, 232
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	2 cut(s)	79, 91
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	8
MnlI	CCTC	3 cut(s)	85, 108, 198
MseI	TTAA	2 cut(s)	119, 192
MslI	CAYNNNNRTG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	59, 62, 71
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	74, 232
NspV	TTCGAA	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	55, 64
PstI	CTGCAG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	119, 192
SatI	GCNGC	2 cut(s)	54, 63
Sau3AI	GATC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	200
SgeI	CNNG	8 cut(s)	67, 78, 83, 90, 136, 138, 196, 221
SmiMI	CAYNNNNRTG	1 cut(s)	11
SsiI	CCGC	5 cut(s)	51, 54, 60, 63, 185
TaaI	ACNGT	3 cut(s)	10, 24, 209
TaqI	TCGA	1 cut(s)	200
TauI	GCSGC	2 cut(s)	56, 65
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	119, 192
Tru9I	TTAA	2 cut(s)	119, 192
TscAI	CASTG	2 cut(s)	15, 29
TspRI	CASTG	2 cut(s)	15, 29
VneI	GTGCAC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.