Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

22345885 .. 22347124

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGACCATTTTTCAAAAGTTTATGTACATATGTCAAATCTAACATTTTTGTATCAAAATATAACTTCTTTATATAATAAATTTAGTCCTCTTCTCTCTTTTCCCTCAAACTTACGTTCCCCTTCAGTATGTACTATCAAATTAAAACTATGTGCATGCCCCTTCTCTCCACTAATTAAACTGCTATCTCCACCATCCCCACTACTACTCACAAAAGCTTCCAAGTTTTCTCCACCACTTCAGTTTCATCTCTATCTCGATGGCTCAAACATCCCCTCCTCCAATTCCTTCTGTGCCTCCAATTCCCACATCGATCAATTCCAACCCACTCATCATCTCAATTTTATGGTCATCTTGGCAGCAATCTTGTGTGCCTTTGTGTGTGCTCTTGGTATCAATTCCATGTTGCACTGCGTTTTTCAATGCATAAGTCGTGCCGTCGTTGAACCGGTCCAATGGGTAGCTTCACGCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACTTCAACTTACGCTGATTCAGGTACTACTTCTCCATCTTCGTCGTCTTCAGGCTGCGCTATTTGTTTGGCTGATTTTTCTGATGGGGACAAGTTAAGGGTGCTGCCCAAGTGCAACCATCGGTTTCACGTTGCCTGCATTGACAACGGCTCACGTCCAGTGACTGCATGCCCTCTCTTTCTGAGATTGTCACAGCCTAAGGGACTCAATTCAGAGAAATACGTCATCGGCTTAGTTGAGTTGCAGATGGGATATGACACTGCAGAAACTCATGAATTTGTATTAGGGTTTCATATTAGGTTCATATCATATGGAGTTATGAATGGAGGAGTTTTGAAGCATGCAAACTATATTATTATAAATGTTCTAGTTTTGGTGTCGCCATATTTCATTTTCATGTGTGTGTGTAAAACATTAACTTATTTATTGACTTTATATAACAAAAACTATGGGAGCTCTCTTTTTAGGGTGAGTGCGGACAATAATGTGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

338

Amino Acids

37.29

Weight (kDa)

9.05

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	191 - 219	2.4e-11	RING-like zinc finger
zf-RING_2	PF13639	191 - 231	1.1e-08	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	875
AciI	CCGC	1 cut(s)	992
AcsI	RAATTY	2 cut(s)	80, 791
AcuI	CTGAAG	3 cut(s)	108, 224, 549
AfaI	GTAC	3 cut(s)	27, 133, 541
AgeI	ACCGGT	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	15, 422, 446, 522, 853
AjiI	CACGTC	1 cut(s)	671
AluBI	AGCT	3 cut(s)	218, 464, 972
AluI	AGCT	3 cut(s)	218, 464, 972
Alw21I	GWGCWC	2 cut(s)	388, 974
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	3 cut(s)	359, 570, 619
ApoI	RAATTY	2 cut(s)	80, 791
AsiGI	ACCGGT	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	4, 451
AsuHPI	GGTGA	1 cut(s)	997
AvaII	GGWCC	2 cut(s)	4, 451
AxyI	CCTNAGG	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	974
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	388, 974
BbvI	GCAGC	3 cut(s)	371, 557, 606
BccI	CCATC	6 cut(s)	202, 254, 559, 593, 642, 757
BceAI	ACGGC	2 cut(s)	422, 679
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	1 cut(s)	777
BisI	GCNGC	3 cut(s)	360, 571, 620
BlsI	GCNGC	3 cut(s)	361, 572, 621
Bme18I	GGWCC	2 cut(s)	4, 451
BmgBI	CACGTC	1 cut(s)	671
BmgT120I	GGNCC	2 cut(s)	4, 451
BpiI	GAAGAC	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 532, 562
Bse118I	RCCGGY	2 cut(s)	448, 471
Bse1I	ACTGG	1 cut(s)	674
Bse21I	CCTNAGG	1 cut(s)	714
BseCI	ATCGAT	1 cut(s)	312
BseGI	GGATG	2 cut(s)	194, 270
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	268, 858
BseXI	GCAGC	3 cut(s)	371, 557, 606
BshFI	GGCC	1 cut(s)	486
BshTI	ACCGGT	1 cut(s)	448
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	2 cut(s)	388, 974
BsiSI	CCGG	2 cut(s)	449, 472
BslFI	GGGAC	2 cut(s)	617, 732
BsmFI	GGGAC	2 cut(s)	617, 732
BsnI	GGCC	1 cut(s)	486
Bsp1286I	GDGCHC	2 cut(s)	388, 974
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	992
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	690
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	787
BspMAI	CTGCAG	1 cut(s)	781
BsrFI	RCCGGY	2 cut(s)	448, 471
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	2 cut(s)	448, 471
BssMI	GATC	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	25
BstC8I	GCNNGC	5 cut(s)	157, 473, 652, 685, 858
BstDEI	CTNAG	3 cut(s)	698, 714, 748
BstF5I	GGATG	2 cut(s)	194, 270
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstNSI	RCATGY	3 cut(s)	159, 687, 860
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	3 cut(s)	371, 557, 606
BstV2I	GAAGAC	1 cut(s)	555
Bsu15I	ATCGAT	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	486
BsuTUI	ATCGAT	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	194, 270
BtsI	GCAGTG	2 cut(s)	409, 774
BtsIMutI	CAGTG	3 cut(s)	409, 681, 774
Cac8I	GCNNGC	5 cut(s)	157, 473, 652, 685, 858
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	575
Cfr10I	RCCGGY	2 cut(s)	448, 471
Cfr13I	GGNCC	2 cut(s)	4, 451
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	26, 132, 540
CspAI	ACCGGT	1 cut(s)	448
CviAII	CATG	6 cut(s)	156, 403, 684, 788, 857, 913
CviQI	GTAC	3 cut(s)	26, 132, 540
DdeI	CTNAG	3 cut(s)	698, 714, 748
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	972
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	974
Eco47I	GGWCC	2 cut(s)	4, 451
Eco53kI	GAGCTC	1 cut(s)	972
Eco57I	CTGAAG	3 cut(s)	108, 224, 549
Eco81I	CCTNAGG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	972
EcoT22I	ATGCAT	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	974
FaeI	CATG	6 cut(s)	159, 406, 687, 791, 860, 916
FaqI	GGGAC	2 cut(s)	617, 732
FatI	CATG	6 cut(s)	155, 402, 683, 787, 856, 912
FauNDI	CATATG	2 cut(s)	30, 826
Fnu4HI	GCNGC	3 cut(s)	360, 571, 620
FokI	GGATG	2 cut(s)	181, 257
FriOI	GRGCYC	1 cut(s)	974
Fsp4HI	GCNGC	3 cut(s)	360, 571, 620
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	3 cut(s)	360, 571, 620
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	2 cut(s)	449, 472
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	6 cut(s)	159, 406, 687, 791, 860, 916
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	2 cut(s)	533, 720
HpaII	CCGG	2 cut(s)	449, 472
HphI	GGTGA	1 cut(s)	997
Hpy188I	TCNGA	3 cut(s)	598, 699, 730
Hpy188III	TCNNGA	2 cut(s)	257, 788
Hpy99I	CGWCG	2 cut(s)	443, 562
HpyAV	CCTTC	5 cut(s)	132, 172, 298, 490, 1000
HpyCH4IV	ACGT	4 cut(s)	115, 645, 670, 738
HpyCH4V	TGCA	9 cut(s)	155, 409, 426, 630, 654, 683, 760, 779, 860
HpyF3I	CTNAG	3 cut(s)	698, 714, 748
HpySE526I	ACGT	4 cut(s)	115, 645, 670, 738
Hsp92II	CATG	6 cut(s)	159, 406, 687, 791, 860, 916
HspAI	GCGC	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	471
KroNI	GCCGGC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	969
LpnPI	CCDG	7 cut(s)	462, 468, 485, 522, 552, 664, 687
Lsp1109I	GCAGC	3 cut(s)	371, 557, 606
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	4 cut(s)	115, 645, 670, 738
MaeIII	GTNAC	2 cut(s)	676, 705
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	4 cut(s)	83, 505, 546, 555
MhlI	GDGCHC	2 cut(s)	388, 974
MlyI	GAGTC	1 cut(s)	714
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	7 cut(s)	99, 115, 286, 289, 307, 699, 836
Mph1103I	ATGCAT	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	471
MseI	TTAA	5 cut(s)	143, 177, 477, 611, 932
MslI	CAYNNNNRTG	2 cut(s)	911, 917
MspI	CCGG	2 cut(s)	449, 472
NaeI	GCCGGC	1 cut(s)	473
NdeI	CATATG	2 cut(s)	30, 826
NdeII	GATC	1 cut(s)	313
NgoMIV	GCCGGC	1 cut(s)	471
NlaIII	CATG	6 cut(s)	159, 406, 687, 791, 860, 916
NmuCI	GTSAC	2 cut(s)	676, 705
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	3 cut(s)	159, 687, 860
PaeI	GCATGC	3 cut(s)	159, 687, 860
PagI	TCATGA	1 cut(s)	787
PceI	AGGCCT	1 cut(s)	486
PdiI	GCCGGC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	361, 572, 621
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	974
PspPI	GGNCC	2 cut(s)	4, 451
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	27, 133, 541
RsaNI	GTAC	3 cut(s)	26, 132, 540
RseI	CAYNNNNRTG	2 cut(s)	911, 917
SacI	GAGCTC	1 cut(s)	974
SaqAI	TTAA	5 cut(s)	143, 177, 477, 611, 932
SatI	GCNGC	3 cut(s)	360, 571, 620
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	4, 451
SchI	GAGTC	1 cut(s)	714
SduI	GDGCHC	2 cut(s)	388, 974
SetI	ASST	9 cut(s)	118, 220, 466, 541, 648, 673, 741, 818, 974
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	2 cut(s)	4, 451
SmiMI	CAYNNNNRTG	2 cut(s)	911, 917
SphI	GCATGC	3 cut(s)	159, 687, 860
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	1 cut(s)	992
SspMI	CTAG	1 cut(s)	884
SstI	GAGCTC	1 cut(s)	974
StuI	AGGCCT	1 cut(s)	486
TaiI	ACGT	4 cut(s)	118, 648, 673, 741
TaqI	TCGA	2 cut(s)	258, 312
TatI	WGTACW	2 cut(s)	25, 131
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	5 cut(s)	143, 177, 477, 611, 932
Tru9I	TTAA	5 cut(s)	143, 177, 477, 611, 932
TscAI	CASTG	3 cut(s)	416, 681, 781
TseFI	GTSAC	2 cut(s)	676, 705
TseI	GCWGC	3 cut(s)	359, 570, 619
Tsp45I	GTSAC	2 cut(s)	676, 705
TspDTI	ATGAA	7 cut(s)	236, 797, 804, 808, 851, 895, 901
TspRI	CASTG	3 cut(s)	416, 681, 781
VpaK11BI	GGWCC	2 cut(s)	4, 451
XapI	RAATTY	2 cut(s)	80, 791
XceI	RCATGY	3 cut(s)	159, 687, 860
XspI	CTAG	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.