pycom10g19610

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
22663027 .. 22663987
961 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGTGGTCGAGGGGGGATTCGAACACAATACCCCGTTGCAGAAACGGAATTGACACAGAAGAGGAGATATACCGTGTTACTTACTTTGACAAGGGAAGAATGCCGGGTTTTGTTGAGAAATGCGCACCGAGGGGCCAGTGCACGTTTGGAGCCCGTTTGCAGGATGAAGAGATAAAGATTTTGGCTGAGTTTGTGAAGTTACAGGCTGATCAAAACTGGCTGAACATTGTAATTGTTGACTCAAGTTTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

5.38

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 139
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 143
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 134, 151
BmrFI CCNGG 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 136, 221
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 136, 221
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 143
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 135
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 143, 154
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 134, 151
BspT104I TTCGAA 1 cut(s) 20
BsrI ACTGG 2 cut(s) 136, 221
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 54, 162
BstBI TTCGAA 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 133
CviJI RGCY 5 cut(s) 135, 152, 185, 206, 220
CviKI_1 RGCY 5 cut(s) 135, 152, 185, 206, 220
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 54, 162
EarI CTCTTC 2 cut(s) 54, 162
Eco24I GRGCYC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 154
FaiI YATR 1 cut(s) 70
FbaI TGATCA 1 cut(s) 208
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 154
FspAI RTGCGCAY 1 cut(s) 124
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 2 cut(s) 17, 239
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 2 cut(s) 141, 238
Hpy8I GTNNAC 2 cut(s) 141, 238
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 39, 141, 160
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 143
HspAI GCGC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 117, 146, 149, 188, 202
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 76, 198
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 71, 108, 179
MhlI GDGCHC 2 cut(s) 143, 154
MluCI AATT 2 cut(s) 48, 231
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 3, 55, 123
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 105
NciI CCSGG 1 cut(s) 105
NdeII GATC 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 134, 151
NsbI TGCGCA 1 cut(s) 124
NspV TTCGAA 1 cut(s) 20
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 134, 151
PspPI GGNCC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 2 cut(s) 143, 154
SetI ASST 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 48, 231
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 8, 20
TasI AATT 2 cut(s) 48, 231
TfiI GAWTC 1 cut(s) 17
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 143
VneI GTGCAC 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.