Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24363963 .. 24364320

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAGAATTTTTCAGCAGAATTTCCATTTTCAAGATTTTTCTTGCATTTACTCTATGTTTCTCAGATATTGGTTTTCTACAAGGAGCTACATCACTTGGCATCAACTATGGCCAACTTGGCGACAATTTACTTCCGCCAGAGAAAGTCCTGGACCTCTTGAGCTCCCTCAACGATCGATCACGAAGGCGCGAATCTACGACACGAATCCTCAAGTCCTCGGGGCATTTGCCAATTCTGGCGTCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

84

Amino Acids

9.19

Weight (kDa)

9.1

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	8, 21
AcyI	GRCGYC	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	89, 165, 249
AluI	AGCT	3 cut(s)	89, 165, 249
Alw21I	GWGCWC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	8, 21
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	181, 197
Bsa29I	ATCGAT	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	220
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	175, 179
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	175, 179
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	178, 182
BstMBI	GATC	2 cut(s)	175, 179
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	178
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	178
CseI	GACGC	1 cut(s)	231
CviJI	RGCY	4 cut(s)	89, 114, 165, 249
CviKI_1	RGCY	4 cut(s)	89, 114, 165, 249
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	2 cut(s)	177, 181
DpnII	GATC	2 cut(s)	175, 179
EaeI	YGGCCR	1 cut(s)	112
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	167
FaiI	YATR	2 cut(s)	58, 111
FriOI	GRGCYC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	194, 207
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	34, 160, 183
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	242
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	175, 179
LmnI	GCTCC	2 cut(s)	86, 170
LpnPI	CCDG	4 cut(s)	137, 153, 164, 224
LweI	GCATC	1 cut(s)	111
MalI	GATC	2 cut(s)	177, 181
MboI	GATC	2 cut(s)	175, 179
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	4 cut(s)	8, 21, 127, 234
MluNI	TGGCCA	1 cut(s)	114
MnlI	CCTC	4 cut(s)	167, 179, 221, 229
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	120
NdeII	GATC	2 cut(s)	175, 179
PfeI	GAWTC	2 cut(s)	194, 207
PfoI	TCCNGGA	1 cut(s)	150
Ple19I	CGATCG	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	175, 179
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	4 cut(s)	91, 159, 167, 251
SfaNI	GCATC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	160, 212
SmoI	CTYRAG	2 cut(s)	160, 212
Sse9I	AATT	4 cut(s)	8, 21, 127, 234
SsiI	CCGC	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	150
TaqI	TCGA	2 cut(s)	178, 245
TasI	AATT	4 cut(s)	8, 21, 127, 234
TfiI	GAWTC	2 cut(s)	194, 207
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	8, 21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.