Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24468229 .. 24469295

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACGTTTTCGTGCACGAAAAACTTCTTCCGGAGGTTCTGTATTGATGAATACCAAATGGACACTGTTGCTCAGAGCAGCTTCTTCTCTACTGATCTTCTGCCTTCCCTTGGAGCCAGAATCAACCAGTCTACTAAGCTCAGGAAATACATTATATCGCCGTATAATCCTCGTTACAGGGCTTGGGGGATGCTACTTGTTCTTCTAGTCATCTACTCAGCGTGGATTTGCCCATTTGAGTTTGCATTTCTGCCTTACAAGCGGGATGCTCTTTTCGTCATTGACAACATTGTCAACGGCTTCTTTGGCATTGACATCATCCTCACTTTCTTTGTTGCCTATCTCGACAGCCGCTCTTACCTTCTTGTTGACAATCCAAAGCAAATCGCAATGAGGTGCGTAAAAGGCTTCATTCTGGTTCAAAACATCCAACATATATGTTTTGATTTCTGTGCAAGAAATAACCCTTTTTTCTTTCGCACAATACAACCAAACAGGTACTTATCAACCTGGTTTCTTTTCGACGTGTGTTCCACTGCACCATTTCAGTCTATTAGCCTCCTCTTGACAAATCACAGCAGCGAACTTGAGTTCAAAGTACTCAATATGCTCCGCCTCTGGCGCCTCCGACGAGTCAGCTCCCTCTTTGCAAGGTCCATCTTCCTTCACCTTTGTTTTTTGTCCAAACTTTCCAATTGTCATAAAACTATCAGAATACACACACAAACTTACAAACCGATTTGTGCTGACTTCAGACTGGAGAAGGACATCCGATTCAACTACTTCTGGATTCGCTGCACGAAGCTCATTTCTGTAAGTCCCGAAAAACCCCATAAGCGCATCACAATTCTTCTCATTTTTCTCTTCACCAATTCGAACTTGGGTGGCATCAAAACTTGTGTCCTGTCAAATTTCAGGTTACCCTTTTCGCAGTGCACTGCGCAGGATGTTTCAACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0007623 GO:0008150 GO:0008324 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010118 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048511 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ion_trans KHA cNMP_binding

Protein Analysis

321

Amino Acids

37.63

Weight (kDa)

9.61

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	59 - 218	5.5e-12	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc16I	TGCGCA	1 cut(s)	942
AccB1I	GGYRCC	1 cut(s)	621
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	30
AciI	CCGC	3 cut(s)	262, 352, 613
AcsI	RAATTY	1 cut(s)	910
AcuI	CTGAAG	1 cut(s)	736
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	2 cut(s)	500, 600
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	4 cut(s)	422, 595, 778, 954
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	4 cut(s)	81, 139, 639, 805
AluI	AGCT	4 cut(s)	81, 139, 639, 805
Alw21I	GWGCWC	2 cut(s)	17, 938
Alw44I	GTGCAC	2 cut(s)	13, 934
Aor13HI	TCCGGA	1 cut(s)	30
ApaLI	GTGCAC	2 cut(s)	13, 934
ApeKI	GCWGC	3 cut(s)	78, 579, 795
ApoI	RAATTY	1 cut(s)	910
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	624, 840, 943
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	659, 859
AsuII	TTCGAA	1 cut(s)	875
AvaII	GGWCC	1 cut(s)	654
BaeGI	GKGCMC	2 cut(s)	17, 938
BanI	GGYRCC	1 cut(s)	621
Bbv12I	GWGCWC	2 cut(s)	17, 938
BbvI	GCAGC	3 cut(s)	90, 591, 782
BccI	CCATC	1 cut(s)	665
BceAI	ACGGC	2 cut(s)	145, 313
BciT130I	CCWGG	1 cut(s)	511
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	625
BisI	GCNGC	4 cut(s)	79, 352, 580, 796
BlsI	GCNGC	4 cut(s)	80, 353, 581, 797
BmcAI	AGTACT	1 cut(s)	600
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	2 cut(s)	115, 623
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	4 cut(s)	180, 256, 849, 897
BpmI	CTGGAG	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	875
BpuEI	CTTGAG	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	127, 762
Bse3DI	GCAATG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	6 cut(s)	195, 271, 318, 426, 768, 952
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	86, 154, 231
BseNI	ACTGG	2 cut(s)	127, 762
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	2 cut(s)	17, 938
BseXI	GCAGC	3 cut(s)	90, 591, 782
BsgI	GTGCAG	2 cut(s)	522, 781
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	2 cut(s)	17, 938
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	804
Bsp119I	TTCGAA	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	17, 938
Bsp13I	TCCGGA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	3 cut(s)	262, 352, 613
BspCNI	CTCAG	3 cut(s)	85, 153, 230
BspEI	TCCGGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	115, 623
BspT104I	TTCGAA	1 cut(s)	875
BspT107I	GGYRCC	1 cut(s)	621
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	127, 762
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	869
BstACI	GRCGYC	1 cut(s)	622
BstBI	TTCGAA	1 cut(s)	875
BstDEI	CTNAG	4 cut(s)	72, 135, 140, 217
BstEII	GGTNACC	1 cut(s)	918
BstF5I	GGATG	6 cut(s)	195, 271, 318, 426, 768, 952
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	3 cut(s)	624, 840, 943
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 306, 405, 621
BstNI	CCWGG	1 cut(s)	511
BstPI	GGTNACC	1 cut(s)	918
BstSCI	CCNGG	1 cut(s)	509
BstSLI	GKGCMC	2 cut(s)	17, 938
BstV1I	GCAGC	3 cut(s)	90, 591, 782
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	6 cut(s)	195, 271, 318, 426, 768, 952
BtsI	GCAGTG	3 cut(s)	534, 936, 938
BtsIMutI	CAGTG	4 cut(s)	63, 534, 936, 938
CfoI	GCGC	3 cut(s)	624, 840, 943
Cfr13I	GGNCC	1 cut(s)	654
CsiI	ACCWGGT	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	499, 599
CviQI	GTAC	2 cut(s)	499, 599
DdeI	CTNAG	4 cut(s)	72, 135, 140, 217
DinI	GGCGCC	1 cut(s)	623
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
EciI	GGCGGA	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	736
Eco91I	GGTNACC	1 cut(s)	918
EcoO65I	GGTNACC	1 cut(s)	918
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	623
EheI	GGCGCC	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	8 cut(s)	155, 165, 435, 437, 439, 608, 702, 834
FaqI	GGGAC	1 cut(s)	804
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	4 cut(s)	79, 352, 580, 796
FokI	GGATG	6 cut(s)	202, 278, 305, 413, 755, 959
Fsp4HI	GCNGC	4 cut(s)	79, 352, 580, 796
FspBI	CTAG	1 cut(s)	206
FspI	TGCGCA	1 cut(s)	942
GlaI	GCGC	3 cut(s)	623, 839, 942
GluI	GCNGC	4 cut(s)	79, 352, 580, 796
GsuI	CTGGAG	1 cut(s)	779
HaeII	RGCGCY	1 cut(s)	625
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	3 cut(s)	624, 840, 943
Hin1I	GRCGYC	1 cut(s)	622
Hin6I	GCGC	3 cut(s)	622, 838, 941
HinP1I	GCGC	3 cut(s)	622, 838, 941
HincII	GTYRAC	2 cut(s)	295, 370
HindII	GTYRAC	2 cut(s)	295, 370
HinfI	GANTC	4 cut(s)	120, 633, 774, 790
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	2 cut(s)	659, 859
Hpy166II	GTNNAC	5 cut(s)	15, 132, 295, 370, 936
Hpy188I	TCNGA	6 cut(s)	75, 629, 713, 755, 773, 962
Hpy188III	TCNNGA	6 cut(s)	31, 142, 344, 565, 787, 821
Hpy8I	GTNNAC	5 cut(s)	15, 132, 295, 370, 936
Hpy99I	CGWCG	2 cut(s)	527, 633
HpyAV	CCTTC	4 cut(s)	114, 371, 674, 757
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	5, 525
HpyCH4V	TGCA	7 cut(s)	15, 245, 455, 539, 650, 798, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 306, 405, 621
HpyF3I	CTNAG	4 cut(s)	72, 135, 140, 217
HpySE526I	ACGT	2 cut(s)	5, 525
Hsp92I	GRCGYC	1 cut(s)	622
HspAI	GCGC	3 cut(s)	622, 838, 941
KasI	GGCGCC	1 cut(s)	621
Kpn2I	TCCGGA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	3 cut(s)	113, 615, 644
Lsp1109I	GCAGC	3 cut(s)	90, 591, 782
LweI	GCATC	4 cut(s)	180, 256, 849, 897
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	5, 525
MaeIII	GTNAC	2 cut(s)	173, 918
MalI	GATC	1 cut(s)	96
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	94
MboII	GAAGA	7 cut(s)	19, 76, 89, 194, 652, 842, 856
MfeI	CAATTG	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	17, 938
MluCI	AATT	4 cut(s)	694, 846, 871, 910
Mly113I	GGCGCC	1 cut(s)	622
MlyI	GAGTC	1 cut(s)	642
MmeI	TCCRAC	2 cut(s)	454, 652
MnlI	CCTC	9 cut(s)	27, 180, 332, 387, 569, 572, 626, 635, 653
MroI	TCCGGA	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	694
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	4 cut(s)	259, 306, 405, 621
NarI	GGCGCC	1 cut(s)	622
NdeII	GATC	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	115, 623
NsbI	TGCGCA	1 cut(s)	942
NspV	TTCGAA	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	3 cut(s)	120, 774, 790
PkrI	GCNGC	4 cut(s)	80, 353, 581, 797
PleI	GAGTC	1 cut(s)	641
PluTI	GGCGCC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	509
PspEI	GGTNACC	1 cut(s)	918
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	115, 623
PspPI	GGNCC	1 cut(s)	654
RsaI	GTAC	2 cut(s)	500, 600
RsaNI	GTAC	2 cut(s)	499, 599
SatI	GCNGC	4 cut(s)	79, 352, 580, 796
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	654
ScaI	AGTACT	1 cut(s)	600
SchI	GAGTC	1 cut(s)	642
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	2 cut(s)	17, 938
SexAI	ACCWGGT	1 cut(s)	509
SfaNI	GCATC	4 cut(s)	180, 256, 849, 897
SfoI	GGCGCC	1 cut(s)	623
SfuI	TTCGAA	1 cut(s)	875
SinI	GGWCC	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	4 cut(s)	694, 846, 871, 910
SsiI	CCGC	3 cut(s)	262, 352, 613
SspDI	GGCGCC	1 cut(s)	621
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	8, 528
TaqI	TCGA	3 cut(s)	345, 522, 875
TasI	AATT	4 cut(s)	694, 846, 871, 910
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	120, 774, 790
TscAI	CASTG	4 cut(s)	70, 541, 938, 943
TseI	GCWGC	3 cut(s)	78, 579, 795
TspDTI	ATGAA	2 cut(s)	63, 400
TspRI	CASTG	4 cut(s)	70, 541, 938, 943
VneI	GTGCAC	2 cut(s)	13, 934
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	1 cut(s)	910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.