pycom10g23040

Ras-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
25283790 .. 25283987
198 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGAAACTTCTGCACTCGAAGCAACCAACGTGGACAACGCATTTTCTGAAGTCCTCACCCAGATCTTTCGCGTCGTGAGCAGGAAGGCCATGGAGTCTGGCAATGAAGGAGCTCCTTCGGCTGTTCCTCAAGGGGAGAAAATCGATGTCAGTAAAGATGTTTCAGCTGTGAAGAAAGGTGGGTGTTGCTCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

6.78

Weight (kDa)

4.89

Isoelectric Point (pI)

19.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 69
AluBI AGCT 2 cut(s) 113, 167
AluI AGCT 2 cut(s) 113, 167
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 49
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BfaI CTAG 1 cut(s) 196
BglII AGATCT 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 115
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 3 cut(s) 20, 78, 119
BstUI CGCG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 89, 113, 122, 167
CviKI_1 RGCY 4 cut(s) 89, 113, 122, 167
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 1 cut(s) 92
FatI CATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 94
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 79, 101, 126
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 78, 119
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 110, 118
LpnPI CCDG 3 cut(s) 67, 74, 84
MaeI CTAG 1 cut(s) 196
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 65, 138
MspA1I CMGCKG 1 cut(s) 167
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 20, 78, 119
NcoI CCATGG 1 cut(s) 90
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 94
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 115
SetI ASST 5 cut(s) 33, 115, 169, 181, 197
SgeI CNNG 9 cut(s) 29, 43, 73, 83, 88, 94, 103, 111, 143
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SspMI CTAG 1 cut(s) 196
SstI GAGCTC 1 cut(s) 115
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 18, 144
TspDTI ATGAA 1 cut(s) 120
XspI CTAG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.