pycom10g23940

Ras-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
25892755 .. 25893080
326 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGAGCCGGAAGGCCCTTGACATTGGGGATGACCCAGCAGCCTTGCCCAAAGGACAAACAATCAATGTCGGGGGAAAGGACGACGTATCAGCTGTGAAGCAAGTCGGGTGTTGCTCTACGGATATTAACTCTTTGAACACTATGCTTCAGATGCTCGAAAGCTTGTCTATGTTTAGCGCAAAATTTAGGATGTTAAGGATATGTTCTTGTTTTTTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

7.92

Weight (kDa)

7.64

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 2 cut(s) 92, 162
AluI AGCT 2 cut(s) 92, 162
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 13
BmsI GCATC 1 cut(s) 141
BseGI GGATG 2 cut(s) 34, 195
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 7
BsnI GGCC 1 cut(s) 14
BspANI GGCC 1 cut(s) 14
BstF5I GGATG 2 cut(s) 34, 195
BstHHI GCGC 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 34, 195
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 13
CviJI RGCY 5 cut(s) 6, 14, 41, 92, 162
CviKI_1 RGCY 5 cut(s) 6, 14, 41, 92, 162
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 13
FaiI YATR 3 cut(s) 143, 170, 202
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 41, 202
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 160
HpaII CCGG 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 20, 48
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 141
MaeII ACGT 1 cut(s) 84
MluCI AATT 1 cut(s) 182
MseI TTAA 2 cut(s) 126, 194
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 92
SaqAI TTAA 2 cut(s) 126, 194
SatI GCNGC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 13
SetI ASST 3 cut(s) 87, 94, 164
SfaNI GCATC 1 cut(s) 141
SgeI CNNG 9 cut(s) 19, 29, 47, 55, 82, 113, 118, 167, 175
Sse9I AATT 1 cut(s) 182
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 182
Tru1I TTAA 2 cut(s) 126, 194
Tru9I TTAA 2 cut(s) 126, 194
TseI GCWGC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 134
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.