pycom10g24270

MACPF domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
26174315 .. 26174692
378 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGATAAACCTTGCAGACAAACCACCGGTAGAGGAACTCCAACAATTTTTGGAATATCAGTTACCACGTCAATGGGCTCCGGTGTATGGTGATCTGCCTCTTGGTCTCAGGCGCAGAAAACAAGTATCCCCATCACTTCAATTCACCTTTATGGGCCCAAAATTTGACATATTAGTTGTTGATAGCATGTTGGGAATTCCTTGTCCCTTGAAGACTTCCATTGCGTATGTTTTATCAAGCGATGGACTGTTAAGAAATTCCTTAAAACTGGAAAATTGTTGTGTCAATGAGTTGAAAAGATGCACTATTCTTTGGCTCGATTTCAGAAAATGA

Protein Analysis

111

Amino Acids

12.67

Weight (kDa)

8.76

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 161, 195, 256
AfiI CCNNNNNNNGG 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 140, 211, 295
AjiI CACGTC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 154
ApaI GGGCCC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 161, 195, 256
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 154, 155
AsuHPI GGTGA 2 cut(s) 101, 136
BaeGI GKGCMC 1 cut(s) 158
BanII GRGCYC 2 cut(s) 79, 158
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 2 cut(s) 139, 236
BciVI GTATCC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 110
BfuI GTATCC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 154, 155
BmiI GGNNCC 2 cut(s) 78, 156
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 110
BsaWI WCCGGW 2 cut(s) 25, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 158
BshFI GGCC 1 cut(s) 156
BshTI ACCGGT 1 cut(s) 25
BsiSI CCGG 2 cut(s) 26, 80
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 110
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 79, 158
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 78, 156
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 72
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 68
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 154, 155
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 77, 156, 316
CviKI_1 RGCY 3 cut(s) 77, 156, 316
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 79, 158
Eco31I GGTCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 79, 158
FaeI CATG 1 cut(s) 190
FaiI YATR 5 cut(s) 87, 152, 170, 188, 228
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 186
FriOI GRGCYC 2 cut(s) 79, 158
GlaI GCGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 156
HapII CCGG 2 cut(s) 26, 80
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HpaII CCGG 2 cut(s) 26, 80
HphI GGTGA 2 cut(s) 101, 136
Hpy188I TCNGA 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 14, 303
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 39, 93, 94, 254
LweI GCATC 1 cut(s) 290
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 60
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 79, 158
MluCI AATT 6 cut(s) 44, 140, 161, 195, 256, 274
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 25, 108
MseI TTAA 2 cut(s) 251, 263
MslI CAYNNNNRTG 2 cut(s) 70, 149
MspI CCGG 2 cut(s) 26, 80
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 78, 156
NspI RCATGY 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 78, 156
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 154, 155
RseI CAYNNNNRTG 2 cut(s) 70, 149
SaqAI TTAA 2 cut(s) 251, 263
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 154, 155
SduI GDGCHC 2 cut(s) 79, 158
SetI ASST 3 cut(s) 12, 70, 149
SfaNI GCATC 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 70, 149
Sse9I AATT 6 cut(s) 44, 140, 161, 195, 256, 274
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 318
TasI AATT 6 cut(s) 44, 140, 161, 195, 256, 274
Tru1I TTAA 2 cut(s) 251, 263
Tru9I TTAA 2 cut(s) 251, 263
XapI RAATTY 3 cut(s) 161, 195, 256
XceI RCATGY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.