Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26176428 .. 26177019

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGTTTTTTTTTTTATAACCAAAACAAATATTCCAACTTTTCGATTAATTATAAACAAAGAATTCAACTTGTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCATAGTTGAATCCTCAAAACCGGAGACTCCAATGGGTCGTCGCCCCAATCTATCAAAACCCTTCAACACTCCCCAAACCTCAACCCCTCTCTCTCCAGCCACTTATTCGCCTTCCGGTTGGGTTCGTTCCCAAATCGATGGCTTTCAATGGGTCTCGCCTCGACCCCCAATCAGCTGCCCAGAATGCCGTCGCGGTGATCGGGTCCGGGTACAATCTCTGCAACGATATCCGGCTCACCGCGTGCAATCTATGCTCATCGAGCTGGACTCGACCGGACCCCGCGACCTCGTCGTCCCTGGTGGTCCCGTCGTGCCCTACGTGTCCACCTCCATCAGGTGCGATAAAGGCGAGCGCACCAGGTTCCGCTCCGACGTCGTTTCGTTTAATCAGGTATGTTATTTTCTTCTTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008219 GO:0009626 GO:0009628 GO:0009651 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0012501 GO:0019222 GO:0031323 GO:0032350 GO:0033036 GO:0033037 GO:0033554 GO:0034050 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051716 GO:0052542 GO:0052545 GO:0062012 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MACPF

Protein Analysis

175

Amino Acids

19.78

Weight (kDa)

10.08

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	18, 54
AasI	GACNNNNNNGTC	1 cut(s)	398
AatII	GACGTC	1 cut(s)	483
AccBSI	CCGCTC	1 cut(s)	474
AccII	CGCG	3 cut(s)	300, 348, 390
AciI	CCGC	4 cut(s)	300, 346, 388, 472
AcsI	RAATTY	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	68, 116, 172, 254
AjnI	CCWGG	2 cut(s)	403, 464
AluBI	AGCT	2 cut(s)	282, 370
AluI	AGCT	2 cut(s)	282, 370
Alw26I	GTCTC	3 cut(s)	82, 125, 265
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	63
AseI	ATTAAT	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	310, 383, 410
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	314, 335
AvaII	GGWCC	3 cut(s)	310, 383, 410
BaeGI	GKGCMC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	2 cut(s)	239, 446
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	405, 466
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	3 cut(s)	82, 125, 265
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	3 cut(s)	314, 405, 466
Bme18I	GGWCC	3 cut(s)	310, 383, 410
BmgT120I	GGNCC	3 cut(s)	310, 383, 410
BmiI	GGNNCC	4 cut(s)	311, 385, 412, 470
BmrFI	CCNGG	3 cut(s)	314, 405, 466
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	427
BsaHI	GRCGYC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	403
BsaWI	WCCGGW	3 cut(s)	127, 221, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	405, 466
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	3 cut(s)	300, 348, 390
Bsh1285I	CGRYCG	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	381
BsiSI	CCGG	5 cut(s)	128, 222, 313, 338, 381
BslFI	GGGAC	2 cut(s)	386, 396
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	3 cut(s)	82, 125, 265
BsmFI	GGGAC	2 cut(s)	386, 396
BsmI	GAATGC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	4 cut(s)	300, 346, 388, 472
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	3 cut(s)	300, 348, 390
BspLI	GGNNCC	4 cut(s)	311, 385, 412, 470
BspTNI	GGTCTC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	405, 466
BstACI	GRCGYC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	350, 458
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstFNI	CGCG	3 cut(s)	300, 348, 390
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	3 cut(s)	82, 125, 265
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	4 cut(s)	291, 358, 367, 453
BstNI	CCWGG	2 cut(s)	405, 466
BstSCI	CCNGG	3 cut(s)	312, 403, 464
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	3 cut(s)	300, 348, 390
BstV1I	GCAGC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	350, 458
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	310, 383, 410
ClaI	ATCGAT	1 cut(s)	243
CsiI	ACCWGGT	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	317
CviJI	RGCY	5 cut(s)	206, 249, 282, 341, 370
CviKI_1	RGCY	5 cut(s)	206, 249, 282, 341, 370
CviQI	GTAC	1 cut(s)	317
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraIII	CACNNNGTG	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	3 cut(s)	310, 383, 410
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	403, 464
EcoRV	GATATC	1 cut(s)	335
FaiI	YATR	5 cut(s)	18, 54, 110, 359, 502
FaqI	GGGAC	2 cut(s)	386, 396
FauI	CCCGC	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	283
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	186
HapII	CCGG	5 cut(s)	128, 222, 313, 338, 381
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	480
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	116, 133, 374
HpaII	CCGG	5 cut(s)	128, 222, 313, 338, 381
HphI	GGTGA	2 cut(s)	314, 335
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	478
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	6 cut(s)	150, 300, 401, 419, 482, 485
HpyAV	CCTTC	2 cut(s)	178, 228
HpyCH4IV	ACGT	2 cut(s)	426, 480
HpyCH4V	TGCA	2 cut(s)	328, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	291, 358, 367, 453
HpySE526I	ACGT	2 cut(s)	426, 480
Hsp92I	GRCGYC	1 cut(s)	480
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	1 cut(s)	269
MabI	ACCWGGT	1 cut(s)	464
MaeII	ACGT	2 cut(s)	426, 480
MalI	GATC	1 cut(s)	306
MbiI	CCGCTC	1 cut(s)	474
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	49, 63
MlyI	GAGTC	2 cut(s)	127, 368
MmeI	TCCRAC	2 cut(s)	60, 501
MnlI	CCTC	6 cut(s)	130, 196, 204, 276, 404, 445
MseI	TTAA	2 cut(s)	48, 492
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	5 cut(s)	128, 222, 313, 338, 381
MspR9I	CCNGG	3 cut(s)	314, 405, 466
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	405, 466
MvnI	CGCG	3 cut(s)	300, 348, 390
MwoI	GCNNNNNNNGC	4 cut(s)	291, 358, 367, 453
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	304
NlaIV	GGNNCC	4 cut(s)	311, 385, 412, 470
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	127, 368
PpsI	GAGTC	2 cut(s)	127, 368
Ppu21I	YACGTR	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	48
PsiI	TTATAA	2 cut(s)	18, 54
Psp6I	CCWGG	2 cut(s)	403, 464
PspGI	CCWGG	2 cut(s)	403, 464
PspN4I	GGNNCC	4 cut(s)	311, 385, 412, 470
PspPI	GGNCC	3 cut(s)	310, 383, 410
PsyI	GACNNNGTC	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	48, 492
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	3 cut(s)	310, 383, 410
SchI	GAGTC	2 cut(s)	127, 368
ScrFI	CCNGG	3 cut(s)	314, 405, 466
SduI	GDGCHC	1 cut(s)	423
SexAI	ACCWGGT	1 cut(s)	464
SinI	GGWCC	3 cut(s)	310, 383, 410
Sse9I	AATT	2 cut(s)	49, 63
SsiI	CCGC	4 cut(s)	300, 346, 388, 472
SspI	AATATT	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	312, 403, 464
TaiI	ACGT	2 cut(s)	429, 483
TaqI	TCGA	5 cut(s)	44, 243, 268, 366, 377
TasI	AATT	2 cut(s)	49, 63
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	48, 492
Tru9I	TTAA	2 cut(s)	48, 492
TseI	GCWGC	1 cut(s)	282
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	310, 383, 410
VspI	ATTAAT	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	63
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.