pycom10g25630

Dynein light chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
27190526 .. 27190723
198 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGCAGGAATTCGATGAGACATACGGGCTGGGGTGGCAATGCATCGTAGGAACAGATTTTGGTTCGTTTGTGACACACAGCCAAGGCTGCTTCATCTATTTCTTCATCGGAAGCCTTGCATTCTTGCTTTTCAGGGGAACGGCTAACCTCGCTGTGGAAGCAGATAAGATCCTGCCACTGGAGGTTGTGGAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.21

Weight (kDa)

4.12

Isoelectric Point (pI)

8.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 2 - 45 2.7e-19 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 154, 178
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 8
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 11
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmsI GCATC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 178
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 154, 178
BseMI GCAATG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 154, 178
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 168
BspPI GGATC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 82
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 4 cut(s) 34, 87, 149, 158
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 176
CviJI RGCY 5 cut(s) 28, 81, 87, 114, 143
CviKI_1 RGCY 5 cut(s) 28, 81, 87, 114, 143
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 2 cut(s) 22, 196
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
GsaI CCCAGC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 4, 42, 119
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 87, 149, 158
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 14, 118, 164, 185
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 1 cut(s) 94
MflI RGATCY 1 cut(s) 168
MluCI AATT 1 cut(s) 8
MnlI CCTC 3 cut(s) 158, 175, 184
Mph1103I ATGCAT 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 34, 87, 149, 158
NdeII GATC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 44
PctI GAATGC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 168
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 168
SetI ASST 2 cut(s) 150, 186
SfaNI GCATC 1 cut(s) 51
Sse9I AATT 1 cut(s) 8
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 8
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 82, 94
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.