pycom10g26520

Salt stress response/antifungal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
27850800 .. 27851248
449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGACAATTATGAAGCTTTTGTTTATCTTCATATGCATGCTTAGCTTGCTCAGCTGCTCGGGCACTACTACTATTACCGCAAATGCTTTTGATCACATCACCCGTGGTACGTGCGTGAGCCAAGACGGGGGCAGCAATGGCGACGCAGAGTTCAGATTCAATCTCAACAACCTGCTCTCCACTACCCTTTCCTCCAATGCCTACCATGGCTATCACAATGCCACCTACGTAGGCACAAACTCAGCTGAAAAAGTCTACAGAATGTGTGACACCGCAACCACCTTCGCCTTTCAAAATTGCCCCAATGCAACAGATGCTGTACTATGGTTCGACAAATGCTTGTATCGAATCTCCAATGATTATGAACGGATAAATCCCATGGCGAACAACTCATGTAGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

5.83

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 255
AciI CCGC 2 cut(s) 78, 273
AfaI GTAC 2 cut(s) 109, 321
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 160, 293
AluBI AGCT 4 cut(s) 16, 45, 54, 245
AluI AGCT 4 cut(s) 16, 45, 54, 245
Alw26I GTCTC 1 cut(s) 393
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 54, 132
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbvI GCAGC 2 cut(s) 41, 144
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 55, 133
BlpI GCTNAGC 2 cut(s) 41, 50
BlsI GCNGC 2 cut(s) 56, 134
BmeT110I CYCGRG 1 cut(s) 58
BmsI GCATC 1 cut(s) 304
Bpu1102I GCTNAGC 2 cut(s) 41, 50
BsaAI YACGTR 2 cut(s) 111, 229
BsaJI CCNNGG 3 cut(s) 103, 205, 378
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 103, 205, 378
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 64, 255
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 41, 144
BsiHKCI CYCGRG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 2 cut(s) 41, 50
Bsp19I CCATGG 2 cut(s) 205, 378
BspACI CCGC 2 cut(s) 78, 273
BspCNI CTCAG 2 cut(s) 63, 254
BspMI ACCTGC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 103, 205, 378
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 2 cut(s) 205, 378
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 2 cut(s) 111, 229
BstC8I GCNNGC 2 cut(s) 38, 47
BstDEI CTNAG 3 cut(s) 41, 50, 241
BstDSI CCRYGG 3 cut(s) 103, 205, 378
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 6 cut(s) 42, 46, 51, 60, 138, 314
BstNSI RCATGY 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 41, 144
BtgI CCRYGG 3 cut(s) 103, 205, 378
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 38, 47
CaiI CAGNNNCTG 1 cut(s) 317
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 108, 320
CviAII CATG 4 cut(s) 37, 206, 379, 393
CviJI RGCY 6 cut(s) 16, 45, 54, 120, 210, 245
CviKI_1 RGCY 6 cut(s) 16, 45, 54, 120, 210, 245
CviQI GTAC 2 cut(s) 108, 320
DdeI CTNAG 3 cut(s) 41, 50, 241
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco105I TACGTA 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 205, 378
Eco88I CYCGRG 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 205, 378
EcoT22I ATGCAT 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 205, 378
FaeI CATG 4 cut(s) 40, 209, 382, 396
FaiI YATR 9 cut(s) 11, 32, 34, 38, 207, 325, 363, 380, 394
FatI CATG 4 cut(s) 36, 205, 378, 392
FauNDI CATATG 1 cut(s) 32
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 55, 133
Fsp4HI GCNGC 2 cut(s) 55, 133
GluI GCNGC 2 cut(s) 55, 133
HgaI GACGC 1 cut(s) 152
Hin1II CATG 4 cut(s) 40, 209, 382, 396
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 156, 348
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 110, 228
HpyCH4V TGCA 2 cut(s) 36, 308
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 46, 51, 60, 138, 314
HpyF3I CTNAG 3 cut(s) 41, 50, 241
HpySE526I ACGT 2 cut(s) 110, 228
Hsp92II CATG 4 cut(s) 40, 209, 382, 396
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 1 cut(s) 185
Lsp1109I GCAGC 2 cut(s) 41, 144
LweI GCATC 1 cut(s) 304
MaeII ACGT 2 cut(s) 110, 228
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 6, 295
MnlI CCTC 1 cut(s) 202
Mph1103I ATGCAT 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 2 cut(s) 54, 245
MwoI GCNNNNNNNGC 6 cut(s) 42, 46, 51, 60, 138, 314
NcoI CCATGG 2 cut(s) 205, 378
NdeI CATATG 1 cut(s) 32
NdeII GATC 1 cut(s) 91
NlaIII CATG 4 cut(s) 40, 209, 382, 396
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 38
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 156, 348
PkrI GCNGC 2 cut(s) 56, 134
Ppu21I YACGTR 2 cut(s) 111, 229
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 2 cut(s) 54, 245
RsaI GTAC 2 cut(s) 109, 321
RsaNI GTAC 2 cut(s) 108, 320
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 2 cut(s) 55, 133
Sau3AI GATC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 18, 47, 56, 113, 174, 227, 231, 247, 284
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 35
SnaBI TACGTA 1 cut(s) 229
SphI GCATGC 1 cut(s) 40
Sse9I AATT 2 cut(s) 6, 295
SsiI CCGC 2 cut(s) 78, 273
StyI CCWWGG 2 cut(s) 205, 378
TaiI ACGT 2 cut(s) 113, 231
TaqI TCGA 2 cut(s) 330, 346
TasI AATT 2 cut(s) 6, 295
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 2 cut(s) 156, 348
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 54, 132
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 19, 26, 378
TspGWI ACGGA 1 cut(s) 382
XceI RCATGY 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.