pycom10g26720

Cysteine-rich PDZ-binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
27961133 .. 27961795
663 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGTTGCGAATTGTGAAGAGGACTTGTGTAGGGTGGACTCCTTACGGAACTACCAAGTGCATCATTTGCAAGCAGCAAGTACACCAGGATGGCAAATACTGTCACACATGTGCTTACTCCAAAGGAGTTTGTGCGATGTGCGGGAAGCAAGTACTTGACACCAAGCTTTACAAACAAAGTAATGTACAAGGCAGGTCAGATGTTTGGTTGACAGTCTATTTGGTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

9.45

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cript PF10235 11 - 61 2.7e-19 Microtubule-associated protein CRIPT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AciI CCGC 1 cut(s) 141
AfaI GTAC 3 cut(s) 81, 153, 186
AflIII ACRYGT 1 cut(s) 107
AjnI CCWGG 1 cut(s) 84
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 73
ArsI GACNNNNNNTTYG 1 cut(s) 202
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 184
BspACI CCGC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 101, 214
Bst6I CTCTTC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 94
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 71
Csp6I GTAC 3 cut(s) 80, 152, 185
CviAII CATG 1 cut(s) 108
CviJI RGCY 1 cut(s) 166
CviKI_1 RGCY 1 cut(s) 166
CviQI GTAC 3 cut(s) 80, 152, 185
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 111
FaiI YATR 1 cut(s) 109
FatI CATG 1 cut(s) 107
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 36, 82, 210
Hpy188I TCNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 36, 82, 210
HpyCH4III ACNGT 2 cut(s) 101, 214
HpyCH4V TGCA 2 cut(s) 60, 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 111
LpnPI CCDG 3 cut(s) 71, 98, 178
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 101
MboII GAAGA 1 cut(s) 28
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 87, 108
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 66
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 108
PciI ACATGT 1 cut(s) 107
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PscI ACATGT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
RsaI GTAC 3 cut(s) 81, 153, 186
RsaNI GTAC 3 cut(s) 80, 152, 185
RseI CAYNNNNRTG 2 cut(s) 87, 108
SatI GCNGC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 86
SetI ASST 2 cut(s) 168, 197
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 2 cut(s) 87, 108
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 101, 214
TasI AATT 1 cut(s) 9
TatI WGTACW 3 cut(s) 79, 151, 184
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 60
XceI RCATGY 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.