Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

28041728 .. 28044225

Gene Structure 2498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATTTCCGTCATTATCAAGTTTGTTGCAGATCTCATCCATTTTGGAGCTGTATATTATGCCCTTGTCTGTCCACGGCCTCCTCCAACTGCAACCCAAGAGCAGATGAGGGTATTTAAAGAAGTTACAGCACCATCAGTACTAAAAGATAGGGCTTCCATCAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCCGCATAACACATCCAGACCAATTTGTTGAAACTGGAACCTACTTATGTGTTCATGTACACCCAAAGCATTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAATTGTAGCTCTAACTGATGAATTCGTGGTTTTGGACAAACCTGCTGGTACAACAGAACTACAGACAAACATTGAAGAAAGTTGTGCAACCTTTGCCACTCGTGCCTTGGGACTAACAACGCCCCTGATGACTACACATCAGATTGATAATTGTACAGAAGGATGTGTTGTCTTAGCTAGAACCAAGGAGTATTGCTCAGTTTTTCACGGAAAAATCAGAGTAAGTTTTGCAATTTCATGCTTTGGCATGCATAATTTTGATAGCCATAATTACTGGGAGGGGAAGGGCAGAGCAGATTTCATGGAACGGTGGAGTTTGTATCAACTTGAAGTCATGGAATGCAAGGAGGTTCCCTGGCCAAGTTCTGTTGTTGAACAGAAATATTGTGTTGAAGACTGTGGGTGGCCAGTGATAATGATAATTTCTTTGGAAATAACAACATTGATGATGCAGGTTCGAGCACAACTGGCAGCGCTTGGTGCACCAATAGTTGGCGATTCCATGTACATGCCAGCTGCAGTTGCAGAAATGGCAAGTCCTGGGCGGAACCCGTTTGGCAAATATAAGAAGCATTATACTCATGTAACTGATAAAGAAGTAGCTATCGAACAGTGGAGTGCACAGCATGGGAAGGAACCTGGCGTTGCTATCTGTCTTCAAGCATGTCAGATATCATGGGATGATGGGAAGTGCACTTTTGAGGCTGGAGCTCCTTGGTGGAGGTGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

345

Amino Acids

38.84

Weight (kDa)

6.46

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	109 - 170	3.6e-07	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	352, 745
AccB1I	GGYRCC	1 cut(s)	1026
AccB7I	CCANNNNNTGG	1 cut(s)	794
AciI	CCGC	2 cut(s)	199, 847
AcoI	YGGCCR	2 cut(s)	659, 707
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	5 cut(s)	141, 255, 352, 457, 809
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	6 cut(s)	227, 377, 632, 677, 695, 962
AjnI	CCWGG	3 cut(s)	656, 841, 940
AluBI	AGCT	6 cut(s)	50, 311, 479, 818, 905, 1013
AluI	AGCT	6 cut(s)	50, 311, 479, 818, 905, 1013
Alw21I	GWGCWC	5 cut(s)	766, 787, 925, 998, 1015
Alw44I	GTGCAC	3 cut(s)	783, 921, 994
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	3 cut(s)	77, 659, 707
ApaLI	GTGCAC	3 cut(s)	783, 921, 994
ApeKI	GCWGC	2 cut(s)	773, 818
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	778
AvrII	CCTAGG	1 cut(s)	272
BaeGI	GKGCMC	3 cut(s)	787, 925, 998
BalI	TGGCCA	2 cut(s)	661, 709
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	1 cut(s)	1015
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	3 cut(s)	197, 702, 950
Bbv12I	GWGCWC	5 cut(s)	766, 787, 925, 998, 1015
BbvI	GCAGC	2 cut(s)	785, 805
BccI	CCATC	3 cut(s)	142, 167, 980
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	3 cut(s)	658, 843, 942
BfaI	CTAG	2 cut(s)	273, 480
BfmI	CTRYAG	2 cut(s)	362, 819
BfoI	RGCGCY	1 cut(s)	779
BfuAI	ACCTGC	2 cut(s)	352, 745
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	2 cut(s)	774, 819
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	2 cut(s)	775, 820
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	658, 843, 942
BmiI	GGNNCC	5 cut(s)	235, 654, 851, 939, 1028
BmrFI	CCNGG	3 cut(s)	658, 843, 942
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	586
BpiI	GAAGAC	3 cut(s)	197, 702, 950
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	1029
BsaJI	CCNNGG	7 cut(s)	74, 272, 408, 486, 656, 842, 1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	5 cut(s)	235, 296, 581, 710, 774
BseBI	CCWGG	3 cut(s)	658, 843, 942
BseDI	CCNNGG	7 cut(s)	74, 272, 408, 486, 656, 842, 1016
BseGI	GGATG	4 cut(s)	36, 208, 470, 988
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	5 cut(s)	235, 296, 581, 710, 774
BseRI	GAGGAG	1 cut(s)	72
BseSI	GKGCMC	3 cut(s)	787, 925, 998
BseXI	GCAGC	2 cut(s)	785, 805
BshFI	GGCC	3 cut(s)	79, 661, 709
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	5 cut(s)	766, 787, 925, 998, 1015
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	79, 661, 709
Bsp1286I	GDGCHC	5 cut(s)	766, 787, 925, 998, 1015
Bsp1407I	TGTACA	3 cut(s)	253, 455, 807
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	199, 847
BspANI	GGCC	3 cut(s)	79, 661, 709
BspCNI	CTCAG	1 cut(s)	512
BspLI	GGNNCC	5 cut(s)	235, 654, 851, 939, 1028
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	2 cut(s)	352, 745
BspT107I	GGYRCC	1 cut(s)	1026
BsrGI	TGTACA	3 cut(s)	253, 455, 807
BsrI	ACTGG	5 cut(s)	235, 296, 581, 710, 774
BssECI	CCNNGG	7 cut(s)	74, 272, 408, 486, 656, 842, 1016
BssMI	GATC	1 cut(s)	31
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	4 cut(s)	272, 408, 486, 1016
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	658, 843, 942
Bst4CI	ACNGT	4 cut(s)	175, 612, 701, 915
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstAUI	TGTACA	3 cut(s)	253, 455, 807
BstC8I	GCNNGC	2 cut(s)	551, 816
BstDEI	CTNAG	2 cut(s)	475, 499
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	4 cut(s)	36, 208, 470, 988
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	395, 404, 770, 782, 824, 833
BstNI	CCWGG	3 cut(s)	658, 843, 942
BstNSI	RCATGY	3 cut(s)	553, 814, 969
BstSCI	CCNGG	3 cut(s)	656, 841, 940
BstSFI	CTRYAG	2 cut(s)	362, 819
BstSLI	GKGCMC	3 cut(s)	787, 925, 998
BstV1I	GCAGC	2 cut(s)	785, 805
BstV2I	GAAGAC	3 cut(s)	197, 702, 950
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	79, 661, 709
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	36, 208, 470, 988
BtsIMutI	CAGTG	2 cut(s)	717, 920
BveI	ACCTGC	2 cut(s)	352, 745
Cac8I	GCNNGC	2 cut(s)	551, 816
CfoI	GCGC	1 cut(s)	778
Csp6I	GTAC	5 cut(s)	140, 254, 351, 456, 808
CviQI	GTAC	5 cut(s)	140, 254, 351, 456, 808
DdeI	CTNAG	2 cut(s)	475, 499
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	659, 707
EciI	GGCGGA	1 cut(s)	862
Ecl136II	GAGCTC	1 cut(s)	1013
Eco130I	CCWWGG	4 cut(s)	272, 408, 486, 1016
Eco24I	GRGCYC	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	975
Eco47III	AGCGCT	1 cut(s)	777
Eco53kI	GAGCTC	1 cut(s)	1013
EcoICRI	GAGCTC	1 cut(s)	1013
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	656, 841, 940
EcoRV	GATATC	1 cut(s)	975
EcoT14I	CCWWGG	4 cut(s)	272, 408, 486, 1016
EcoT22I	ATGCAT	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	1015
ErhI	CCWWGG	4 cut(s)	272, 408, 486, 1016
FaqI	GGGAC	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	774, 819
FokI	GGATG	4 cut(s)	23, 195, 477, 995
FriOI	GRGCYC	1 cut(s)	1015
Fsp4HI	GCNGC	2 cut(s)	774, 819
FspBI	CTAG	2 cut(s)	273, 480
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	2 cut(s)	774, 819
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	79, 661, 709
HhaI	GCGC	1 cut(s)	778
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HinfI	GANTC	1 cut(s)	800
Hpy166II	GTNNAC	5 cut(s)	74, 256, 785, 923, 996
Hpy188I	TCNGA	3 cut(s)	444, 521, 972
Hpy188III	TCNNGA	2 cut(s)	212, 300
Hpy8I	GTNNAC	5 cut(s)	74, 256, 785, 923, 996
HpyAV	CCTTC	3 cut(s)	455, 580, 928
HpyCH4III	ACNGT	4 cut(s)	175, 612, 701, 915
HpyF10VI	GCNNNNNNNGC	6 cut(s)	395, 404, 770, 782, 824, 833
HpyF3I	CTNAG	2 cut(s)	475, 499
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	3 cut(s)	47, 1010, 1018
Lsp1109I	GCAGC	2 cut(s)	785, 805
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	2 cut(s)	273, 480
MaeIII	GTNAC	2 cut(s)	124, 886
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	202, 389, 707, 950
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	5 cut(s)	766, 787, 925, 998, 1015
MlsI	TGGCCA	2 cut(s)	661, 709
MluCI	AATT	9 cut(s)	218, 285, 303, 323, 451, 534, 556, 571, 723
MluNI	TGGCCA	2 cut(s)	661, 709
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	90, 93, 102, 574, 643, 997, 1017
Mox20I	TGGCCA	2 cut(s)	661, 709
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	194
MscI	TGGCCA	2 cut(s)	661, 709
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	2 cut(s)	661, 709
MspA1I	CMGCKG	1 cut(s)	818
MspR9I	CCNGG	3 cut(s)	658, 843, 942
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	3 cut(s)	658, 843, 942
MwoI	GCNNNNNNNGC	6 cut(s)	395, 404, 770, 782, 824, 833
NdeII	GATC	1 cut(s)	31
NlaIV	GGNNCC	5 cut(s)	235, 654, 851, 939, 1028
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	3 cut(s)	553, 814, 969
PaeI	GCATGC	1 cut(s)	553
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	800
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	2 cut(s)	775, 820
Psp124BI	GAGCTC	1 cut(s)	1015
Psp6I	CCWGG	3 cut(s)	656, 841, 940
PspGI	CCWGG	3 cut(s)	656, 841, 940
PspN4I	GGNNCC	5 cut(s)	235, 654, 851, 939, 1028
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	5 cut(s)	141, 255, 352, 457, 809
RsaNI	GTAC	5 cut(s)	140, 254, 351, 456, 808
RseI	CAYNNNNRTG	1 cut(s)	809
SacI	GAGCTC	1 cut(s)	1015
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	774, 819
Sau3AI	GATC	1 cut(s)	31
ScaI	AGTACT	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	658, 843, 942
SduI	GDGCHC	5 cut(s)	766, 787, 925, 998, 1015
SfaNI	GCATC	1 cut(s)	741
SfcI	CTRYAG	2 cut(s)	362, 819
SmiMI	CAYNNNNRTG	1 cut(s)	809
SphI	GCATGC	1 cut(s)	553
Sse9I	AATT	9 cut(s)	218, 285, 303, 323, 451, 534, 556, 571, 723
SsiI	CCGC	2 cut(s)	199, 847
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	2 cut(s)	273, 480
SstI	GAGCTC	1 cut(s)	1015
StyD4I	CCNGG	3 cut(s)	656, 841, 940
StyI	CCWWGG	4 cut(s)	272, 408, 486, 1016
TaaI	ACNGT	4 cut(s)	175, 612, 701, 915
TaqI	TCGA	2 cut(s)	760, 909
TasI	AATT	9 cut(s)	218, 285, 303, 323, 451, 534, 556, 571, 723
TatI	WGTACW	4 cut(s)	139, 253, 455, 807
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	717, 920
TseI	GCWGC	2 cut(s)	773, 818
TspDTI	ATGAA	5 cut(s)	239, 297, 336, 528, 592
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	717, 920
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	3 cut(s)	783, 921, 994
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	3 cut(s)	553, 814, 969
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmaJI	CCTAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	2 cut(s)	273, 480
ZrmI	AGTACT	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.