pycom10g27240

Starch synthase 3, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
28263737 .. 28264330
594 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGAGATATGGTTCTATACCTGTTGTTCGAAAAACTGGAGGACTTTATGATACGGTATTTGATGTTGACCATGATAAAGAGAGAGCAGACGCCGAGGGTGTCGAGCCAAACGGTTTCAGCTTCGATGGAGCTGATGCTGCCGGTGTCGATTATGCTCTTAATAGGGCAATCTCCGCTTGGTATGATGGTCGGGATTGGTTTAACTCGTTGTGCAAGACGGTGATGGAGCAAGATTGGTCTTGGAACAAACCAGCTCTCGACTATATGGAGCTTTACCACGCAGCACGGAAGGAGTGA

Protein Analysis

99

Amino Acids

11.17

Weight (kDa)

4.67

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 90
AluBI AGCT 4 cut(s) 120, 131, 254, 271
AluI AGCT 4 cut(s) 120, 131, 254, 271
ApeKI GCWGC 2 cut(s) 137, 281
AsuHPI GGTGA 1 cut(s) 232
AsuII TTCGAA 1 cut(s) 28
BbvI GCAGC 2 cut(s) 124, 293
BccI CCATC 3 cut(s) 119, 179, 217
BisI GCNGC 2 cut(s) 138, 282
BlsI GCNGC 2 cut(s) 139, 283
BmsI GCATC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 124, 293
BsiSI CCGG 1 cut(s) 141
Bsp119I TTCGAA 1 cut(s) 28
BspACI CCGC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 3 cut(s) 55, 113, 220
BstACI GRCGYC 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 137, 173
BstV1I GCAGC 2 cut(s) 124, 293
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 71
CviJI RGCY 5 cut(s) 106, 120, 131, 254, 271
CviKI_1 RGCY 5 cut(s) 106, 120, 131, 254, 271
FaeI CATG 1 cut(s) 74
FaiI YATR 8 cut(s) 9, 17, 48, 72, 153, 183, 264, 266
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 138, 282
Fsp4HI GCNGC 2 cut(s) 138, 282
GluI GCNGC 2 cut(s) 138, 282
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 74
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 191, 257
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 3 cut(s) 55, 113, 220
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 173
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 74
LmnI GCTCC 3 cut(s) 128, 226, 268
LpnPI CCDG 4 cut(s) 21, 33, 154, 264
Lsp1109I GCAGC 2 cut(s) 124, 293
LweI GCATC 1 cut(s) 124
MnlI CCTC 2 cut(s) 32, 88
MseI TTAA 2 cut(s) 159, 201
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 137, 173
NlaIII CATG 1 cut(s) 74
NmeAIII GCCGAG 1 cut(s) 118
NspV TTCGAA 1 cut(s) 28
PkrI GCNGC 2 cut(s) 139, 283
SaqAI TTAA 2 cut(s) 159, 201
SatI GCNGC 2 cut(s) 138, 282
SetI ASST 5 cut(s) 22, 122, 133, 256, 273
SfaNI GCATC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 28
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 3 cut(s) 55, 113, 220
TaqI TCGA 5 cut(s) 28, 102, 123, 147, 258
Tru1I TTAA 2 cut(s) 159, 201
Tru9I TTAA 2 cut(s) 159, 201
TseI GCWGC 2 cut(s) 137, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.