pycom10g27880
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
28725222 .. 28727127
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27880.1

Sequence Viewer

Length: 639 bp
ATGTTGATAAAGAATTTCTTGCATTCTATTTTGTTAATTCAATCAAAATCATGCGTGTCGCTCCACAGCGACCCTGGCCCCCCACGACCCCAATGCGACGCCGTTTGCCATTGCCTTGGAAATAAAAACCCAAGCGCCAAAAGCTGTTACGAAAACAGAGAAAATTCACTCACACTCTCTCTCTCCCTCTCCCTCTCTCTCTCTCTGGTTTTCAAATTTCTGAGTGAAGTTCCTCCTGTTTTCGTCCGAATGGAGATTGGATCGGGTCGGACCGGTGTGTGCCCGAAAGAGCATCAGAAGATTTACCAGGAGTGGTTCAACTTGGTTGATTCCGATGGCGATGGCCGTATTACTGGAAACGAAGCCACCAAGTTCTTCGCCATGTCGAAGCTTTCTCGAGAAGAACTCAAGCAGGTTTGGGCGATTGCTGACACGAAACGGCAGGGATTCTTGGGGTTTTCGGAGTTCGTTACTGCAATGCAGATGATTTCCTTGGCACAAGAACATGAACTAAGCCCAGACGTCCTCAAAACCGCAGTTGACTGGGAAAACATTAAACCTCCAGTTATAGAAGGTTTGGATGATTTGATAGCTAAAACCAAGAGTTTAACAACATATGGAGTTGAAGTAAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

213

Amino Acids

23.55

Weight (kDa)

5.97

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EH PF12763 98 - 177 7.7e-13 EH domain
EF-hand_7 PF13499 100 - 161 3.4e-09 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 403
AciI CCGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 3 cut(s) 13, 163, 215
AcyI GRCGYC 2 cut(s) 99, 522
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 4 cut(s) 41, 214, 319, 626
AjnI CCWGG 2 cut(s) 73, 306
AluBI AGCT 3 cut(s) 144, 391, 593
AluI AGCT 3 cut(s) 144, 391, 593
AlwI GGATC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 2 cut(s) 76, 343
ApoI RAATTY 3 cut(s) 13, 163, 215
AsiGI ACCGGT 1 cut(s) 272
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 77, 270
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 284
BccI CCATC 2 cut(s) 329, 335
BceAI ACGGC 3 cut(s) 86, 330, 455
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 75, 308
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 75, 308
Bme18I GGWCC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 2 cut(s) 77, 270
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 75, 308
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 553
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 392
BsaHI GRCGYC 2 cut(s) 99, 522
BsaJI CCNNGG 3 cut(s) 73, 115, 492
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 1 cut(s) 612
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 358, 548, 563
Bse3DI GCAATG 2 cut(s) 109, 483
BseBI CCWGG 2 cut(s) 75, 308
BseDI CCNNGG 3 cut(s) 73, 115, 492
BseGI GGATG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 109, 483
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 358, 548, 563
BseSI GKGCMC 1 cut(s) 284
BshFI GGCC 2 cut(s) 78, 345
BshTI ACCGGT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 273
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 78, 345
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 1 cut(s) 534
BspANI GGCC 2 cut(s) 78, 345
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 268
BsrDI GCAATG 2 cut(s) 109, 483
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 3 cut(s) 358, 548, 563
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 73, 115, 492
BssMI GATC 1 cut(s) 260
BssNI GRCGYC 2 cut(s) 99, 522
BssT1I CCWWGG 2 cut(s) 115, 492
Bst2UI CCWGG 2 cut(s) 75, 308
BstACI GRCGYC 2 cut(s) 99, 522
BstDEI CTNAG 2 cut(s) 221, 512
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 75, 141
BstNI CCWGG 2 cut(s) 75, 308
BstSCI CCNGG 2 cut(s) 73, 306
BstSLI GKGCMC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuRI GGCC 2 cut(s) 78, 345
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 1 cut(s) 586
BveI ACCTGC 1 cut(s) 403
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 77, 270
CpoI CGGWCCG 1 cut(s) 270
CseI GACGC 1 cut(s) 107
CspAI ACCGGT 1 cut(s) 272
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 3 cut(s) 51, 382, 506
CviJI RGCY 7 cut(s) 78, 144, 345, 365, 391, 516, 593
CviKI_1 RGCY 7 cut(s) 78, 144, 345, 365, 391, 516, 593
DdeI CTNAG 2 cut(s) 221, 512
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 115, 492
Eco47I GGWCC 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 396
EcoRII CCWGG 2 cut(s) 73, 306
EcoT14I CCWWGG 2 cut(s) 115, 492
ErhI CCWWGG 2 cut(s) 115, 492
FaeI CATG 3 cut(s) 54, 385, 509
FaiI YATR 6 cut(s) 52, 383, 507, 569, 616, 618
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 3 cut(s) 50, 381, 505
FauNDI CATATG 1 cut(s) 616
FokI GGATG 1 cut(s) 593
GlaI GCGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 78, 345
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 99, 522
Hin1II CATG 3 cut(s) 54, 385, 509
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 329, 447
HpaII CCGG 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 6 cut(s) 222, 248, 270, 297, 334, 463
Hpy188III TCNNGA 2 cut(s) 396, 398
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 566
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 3 cut(s) 22, 476, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 141
HpyF3I CTNAG 2 cut(s) 221, 512
HpySE526I ACGT 1 cut(s) 522
Hsp92I GRCGYC 2 cut(s) 99, 522
Hsp92II CATG 3 cut(s) 54, 385, 509
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 66
LweI GCATC 1 cut(s) 301
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 146, 469
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 3 cut(s) 310, 367, 413
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 4 cut(s) 13, 36, 163, 215
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 5 cut(s) 197, 203, 243, 536, 570
MseI TTAA 3 cut(s) 35, 555, 608
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 75, 308
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 2 cut(s) 75, 308
MwoI GCNNNNNNNGC 2 cut(s) 75, 141
NdeI CATATG 1 cut(s) 616
NdeII GATC 1 cut(s) 260
NlaIII CATG 3 cut(s) 54, 385, 509
NlaIV GGNNCC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 396
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 329, 447
PinAI ACCGGT 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 73, 306
PspGI CCWGG 2 cut(s) 73, 306
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 77, 270
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 35, 555, 608
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 2 cut(s) 77, 270
ScrFI CCNGG 2 cut(s) 75, 308
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 146, 393, 417, 525, 562, 577, 595
SfaNI GCATC 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 396, 407
SmoI CTYRAG 2 cut(s) 396, 407
Sse9I AATT 4 cut(s) 13, 36, 163, 215
SsiI CCGC 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 73, 306
StyI CCWWGG 2 cut(s) 115, 492
TaiI ACGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 386, 397
TasI AATT 4 cut(s) 13, 36, 163, 215
TfiI GAWTC 2 cut(s) 329, 447
Tru1I TTAA 3 cut(s) 35, 555, 608
Tru9I TTAA 3 cut(s) 35, 555, 608
TspDTI ATGAA 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 3 cut(s) 13, 163, 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 396
ZraI GACGTC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.