Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

28824927 .. 28825139

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTGGATCTGGACAAGTCCTATCCTCCTCCTACCTCCATCAACCCCATCTCGTGGCCTCGTCGGCTCCGGCATGCAAGCTTCAAGCTCACTCGCCAAGCCAACATCGAGTTTTTAACTGAGAAACCCCAATTTGTAATCCTCCCAGATTTCGTCGAGGCGGTCTCGCTGCGGGGGTGGAGTCACCGACTGAAGGAGGGTTGGGTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

71

Amino Acids

8.26

Weight (kDa)

10.14

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	54
AciI	CCGC	2 cut(s)	161, 172
AclWI	GGATC	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	54, 193
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	2 cut(s)	81, 88
AluI	AGCT	2 cut(s)	81, 88
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	176
BauI	CACGAG	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	47, 56
BcoDI	GTCTC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BsaI	GGTCTC	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 193
BseLI	CCNNNNNNNGG	2 cut(s)	54, 193
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	54, 193
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	161, 172
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	169
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	75, 79
BstDEI	CTNAG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	75, 79
CfoI	GCGC	1 cut(s)	210
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	5 cut(s)	58, 67, 81, 88, 101
CviKI_1	RGCY	5 cut(s)	58, 67, 81, 88, 101
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	212
FaeI	CATG	1 cut(s)	77
FaiI	YATR	1 cut(s)	75
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	170
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	66, 158
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	2 cut(s)	83, 159
Lsp1109I	GCAGC	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	36, 39, 46, 69, 151, 152, 190
MseI	TTAA	1 cut(s)	116
MspI	CCGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	190
SetI	ASST	3 cut(s)	38, 83, 90
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	161, 172
TaqI	TCGA	2 cut(s)	108, 156
TasI	AATT	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	54
XceI	RCATGY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.