Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29027405 .. 29027908

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCATCTGCGTCACATGTATAATCCAGCCATGCACCAGTGGAGGTCATCACTTGTCATTTGTGTGGTGTGCCGTAAAAATCTTCAACAAAATAAAGAAAACAACGGTCATGATGCGCCCTCAATACCTCCTCCTTTTCGCCCTCGTCCTCCTTCCTTTAGTGGTCGCTGCCTCGGACCGATGGAGCCTTCTGGTCGGCCATCGCGAGCCGTACACATCAGCGATCGACCCCATTTGAAAGATATCGGGAACTCTGCAGTGACGGTCTACAACAAGCAATTGGAAACCAAAGGCCAGAACAAGTTGGTGTTTGTGAACGTTGAAGGGGGCGAGTTCATAGTGGAGGACGGCATCAAATATCTGCTTGTCATTTCCGCCAGGGATGAGATGGTGGCTGATCCTGCCGCCATCTCTGCCGTCGGTTACTATCACGTCTTTGTGTCGGAGAAGTCTTGGGAGCATTTTAAGCAATTCCTCTTTTTTGTATCAATTGGTAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

9.24

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	76 - 161	6.4e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	205
AciI	CCGC	2 cut(s)	375, 405
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	498
AfaI	GTAC	1 cut(s)	213
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	86, 238, 323
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	377
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	2 cut(s)	197, 292
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	4 cut(s)	175, 208, 382, 416
BceAI	ACGGC	4 cut(s)	57, 194, 364, 401
BciT130I	CCWGG	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	169, 405
BlsI	GCNGC	2 cut(s)	170, 406
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	3 cut(s)	13, 103, 360
BsaJI	CCNNGG	2 cut(s)	172, 378
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	172, 378
BseGI	GGATG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	199, 294
BsiEI	CGRYCG	1 cut(s)	226
BsnI	GGCC	2 cut(s)	199, 294
Bsp143I	GATC	2 cut(s)	223, 397
Bsp68I	TCGCGA	1 cut(s)	205
BspACI	CCGC	2 cut(s)	375, 405
BspANI	GGCC	2 cut(s)	199, 294
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	172, 378
BssMI	GATC	2 cut(s)	223, 397
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	107, 265
BstC8I	GCNNGC	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	2 cut(s)	226, 400
BstMBI	GATC	2 cut(s)	223, 397
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 413, 466
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	199, 294
BtgZI	GCGATG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	44, 264
BtuMI	TCGCGA	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	176
CpoI	CGGWCCG	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	212
CspI	CGGWCCG	1 cut(s)	176
CviAII	CATG	3 cut(s)	16, 31, 110
CviJI	RGCY	6 cut(s)	29, 187, 199, 209, 294, 395
CviKI_1	RGCY	6 cut(s)	29, 187, 199, 209, 294, 395
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	2 cut(s)	225, 399
DpnII	GATC	2 cut(s)	223, 397
EaeI	YGGCCR	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	19, 34, 113
FaiI	YATR	5 cut(s)	17, 21, 32, 111, 338
FatI	CATG	3 cut(s)	15, 30, 109
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	169, 405
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	169, 405
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	169, 405
HaeIII	GGCC	2 cut(s)	199, 294
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	19, 34, 113
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	214, 268, 316
Hpy188I	TCNGA	2 cut(s)	176, 445
Hpy188III	TCNNGA	3 cut(s)	110, 204, 247
Hpy8I	GTNNAC	3 cut(s)	214, 268, 316
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	162, 198, 317
HpyCH4III	ACNGT	2 cut(s)	107, 265
HpyCH4IV	ACGT	2 cut(s)	318, 432
HpyCH4V	TGCA	3 cut(s)	4, 34, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 413, 466
HpySE526I	ACGT	2 cut(s)	318, 432
Hsp92II	CATG	3 cut(s)	19, 34, 113
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	223, 397
LmnI	GCTCC	2 cut(s)	184, 457
LpnPI	CCDG	7 cut(s)	39, 50, 177, 308, 364, 391, 414
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	3 cut(s)	13, 103, 360
MaeII	ACGT	2 cut(s)	318, 432
MaeIII	GTNAC	3 cut(s)	11, 259, 422
MalI	GATC	2 cut(s)	225, 399
MboI	GATC	2 cut(s)	223, 397
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	2 cut(s)	278, 489
MluCI	AATT	4 cut(s)	278, 470, 489, 498
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	9 cut(s)	36, 130, 138, 141, 153, 159, 182, 337, 485
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	465, 502
MslI	CAYNNNNRTG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	2 cut(s)	278, 489
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	3 cut(s)	401, 413, 466
NdeII	GATC	2 cut(s)	223, 397
NlaIII	CATG	3 cut(s)	19, 34, 113
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	11, 259
NruI	TCGCGA	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	19
PagI	TCATGA	1 cut(s)	109
PciI	ACATGT	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	170, 406
Ple19I	CGATCG	1 cut(s)	226
PscI	ACATGT	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	226
RruI	TCGCGA	1 cut(s)	205
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	62
Rsr2I	CGGWCCG	1 cut(s)	176
RsrII	CGGWCCG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	465, 502
SatI	GCNGC	2 cut(s)	169, 405
Sau3AI	GATC	2 cut(s)	223, 397
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	4 cut(s)	47, 130, 321, 435
SfaNI	GCATC	3 cut(s)	13, 103, 360
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	278, 470, 489, 498
SsiI	CCGC	2 cut(s)	375, 405
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	107, 265
TaiI	ACGT	2 cut(s)	321, 435
TaqI	TCGA	1 cut(s)	226
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	4 cut(s)	278, 470, 489, 498
TauI	GCSGC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	465, 502
Tru9I	TTAA	2 cut(s)	465, 502
TscAI	CASTG	2 cut(s)	44, 264
TseFI	GTSAC	2 cut(s)	11, 259
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	2 cut(s)	11, 259
TspDTI	ATGAA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	44, 264
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.