Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29308235 .. 29308996

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGTGATTTCGTCCCAGAAGACATCGGAAGCATTTCTGGTTTTGAACCTCCCCAGTCGCCGGACTCACGTTATAACAACCTGCAGCTTGGATCTGAATATTTCGCGAAGGAGCCCCCATTGGTTCCTCCACACCTACAAATGACACTGCTGAATGCACCTTCATCTTGCATGGAGATGCCGCCTCCTTTGTCGAGACCTCAACATGTGGTACTCAATCATCTTTACATGCAGAGAGGGAAGGGTGGACTATCTGTGGTGGCACTCGGGACAACAGAGAGGTTTATAGCGAAGTATGTTACAGTGGTTCTCTACAAGTCCTTGCAGAGAAAAAAAAAAAAAAACACACACACACACACGCACACAAAGTGTCTGTCTGGACTCCATGGTCCCCATTATGTAGTTAGTTTTATATCAATTTCAAAGTCAAATGCCATTTCCATGGCGTCGGTTAATGTTCAGGAAGGATTTGTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPK1_CBM AMPKBI

Protein Analysis

160

Amino Acids

17.65

Weight (kDa)

9.35

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPKBI	PF04739	35 - 107	4.8e-26	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AasI	GACNNNNNNGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	90
AccII	CGCG	1 cut(s)	107
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	446
AdeI	CACNNNGTG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	47, 423
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	90
BisI	GCNGC	2 cut(s)	86, 182
BlsI	GCNGC	2 cut(s)	87, 183
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	114, 126, 391
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	385, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	385, 441
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	283, 375
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	283, 375
BsmI	GAATGC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	92
Bsp19I	CCATGG	2 cut(s)	385, 441
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	114, 126, 391
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	385, 441
BssMI	GATC	1 cut(s)	92
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	385, 441
Bst4CI	ACNGT	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	446
BstDSI	CCRYGG	2 cut(s)	385, 441
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	92
BstNSI	RCATGY	2 cut(s)	209, 232
BstSFI	CTRYAG	1 cut(s)	83
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	385, 441
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	146, 309
BtuMI	TCGCGA	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	5 cut(s)	172, 206, 229, 386, 442
CviJI	RGCY	2 cut(s)	88, 115
CviKI_1	RGCY	2 cut(s)	88, 115
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
DraIII	CACNNNGTG	1 cut(s)	369
DrdI	GACNNNNNNGTC	1 cut(s)	387
DseDI	GACNNNNNNGTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	385, 441
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	385, 441
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	385, 441
FaeI	CATG	5 cut(s)	175, 209, 232, 389, 445
FaqI	GGGAC	2 cut(s)	283, 375
FatI	CATG	5 cut(s)	171, 205, 228, 385, 441
Fnu4HI	GCNGC	2 cut(s)	86, 182
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	86, 182
GluI	GCNGC	2 cut(s)	86, 182
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	5 cut(s)	175, 209, 232, 389, 445
HinfI	GANTC	2 cut(s)	65, 381
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	29, 97
Hpy188III	TCNNGA	5 cut(s)	106, 195, 268, 378, 461
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	4 cut(s)	103, 171, 235, 458
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	85, 158, 171, 232, 325
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	5 cut(s)	175, 209, 232, 389, 445
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	8 cut(s)	24, 30, 68, 75, 95, 363, 446, 460
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	59, 375
MnlI	CCTC	6 cut(s)	60, 138, 195, 210, 230, 273
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	176, 440
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	1 cut(s)	107
NcoI	CCATGG	2 cut(s)	385, 441
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	5 cut(s)	175, 209, 232, 389, 445
NlaIV	GGNNCC	3 cut(s)	114, 126, 391
NruI	TCGCGA	1 cut(s)	107
NspI	RCATGY	2 cut(s)	209, 232
PciI	ACATGT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	87, 183
PleI	GAGTC	2 cut(s)	59, 375
PpsI	GAGTC	2 cut(s)	59, 375
PscI	ACATGT	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	114, 126, 391
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	92
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	2 cut(s)	176, 440
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	86, 182
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	59, 375
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	9 cut(s)	52, 73, 84, 90, 138, 163, 202, 284, 479
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	176, 440
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	182
SspI	AATATT	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	385, 441
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	153, 309
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	153, 309
VpaK11BI	GGWCC	1 cut(s)	389
XceI	RCATGY	2 cut(s)	209, 232
XmnI	GAANNNNTTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.