Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

29446487 .. 29448676

Gene Structure 2190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTGTTGTGCTTCGAAACCATATCCCAAGGATTCTCAGAAAGTACTTCAGAGAAAAGCCATATTACGTGGATCGTTCTTGATTTGTTCAATGAGGTGGAATTTCAAACTGCCTCAGGTCAGATGATAGATTTGATCACTACTATCGAAGGAGAAAAAGATCTATCCAAATACTCATTGTCAATTCACCGCCGTATTGTTCAGTACAAGACTGCCTATTACTCATTTTACCTTTCCGTTGCATGTGCATTGCTTATGTCAGGTGAGGAACTGGAAAAACATATTGACGTAAAAAACATTCTTGTTGAGATGGGGATCTACTTTCAAGTACAGGATGATTATTTGGATTGCTTTGGTGATCCGGAAACGATTGGTAAGATAGGAACAGATATTGAAGATTTCAAGTGCTCTTGGTTGGTGGTGAAAGCTTTGGAACTCTGCAATGAGGAACAAAAGAAAGTACTACATGAGAATTATGGGAAACCAGACCCAGAAAATGTGGCAAAAGTAAAGGCCCTCTACAAAGAACTCGATATTGAGGGTGTATTTGCGGATTATGAGAGCAAAAGCTACAAGAAACTGACGAGTTGGATTGAAGGGCACCCAAGCAAAGCGGTGCAAGCAGTGTTGAAGTCCTTCTTGGGCAAGATTTACAAGAGGCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004161 GO:0004337 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016765 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045337 GO:0045338 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko05164 ko05166 map00900 map01100 map01110 map01130 map05164 map05166

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

223

Amino Acids

25.46

Weight (kDa)

5.15

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	25 - 177	1.9e-44	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	600
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	3 cut(s)	190, 551, 614
AclWI	GGATC	3 cut(s)	80, 323, 353
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	4 cut(s)	46, 206, 330, 462
AgsI	TTSAA	7 cut(s)	91, 107, 326, 395, 403, 596, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	2 cut(s)	428, 570
AluI	AGCT	2 cut(s)	428, 570
Alw21I	GWGCWC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	80, 323, 353
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	513
ApoI	RAATTY	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	4 cut(s)	179, 275, 368, 433
AsuII	TTCGAA	1 cut(s)	15
AxyI	CCTNAGG	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	603
BanI	GGYRCC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	410
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	135
BglII	AGATCT	1 cut(s)	160
BmcAI	AGTACT	2 cut(s)	46, 462
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	602
Bpu14I	TTCGAA	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	276
Bse21I	CCTNAGG	1 cut(s)	115
Bse3DI	GCAATG	2 cut(s)	248, 448
Bse8I	GATNNNNATC	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	314
BseMI	GCAATG	2 cut(s)	248, 448
BseMII	CTCAG	2 cut(s)	51, 129
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	603
BshFI	GGCC	1 cut(s)	515
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	362
BsnI	GGCC	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	410, 603
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	72, 135, 160, 315, 358
BspACI	CCGC	3 cut(s)	190, 551, 614
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	50, 128
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	3 cut(s)	80, 323, 353
BspT104I	TTCGAA	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	600
BsrDI	GCAATG	2 cut(s)	248, 448
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	5 cut(s)	72, 135, 160, 315, 358
BssT1I	CCWWGG	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	69
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	2 cut(s)	37, 115
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	5 cut(s)	75, 138, 163, 318, 361
BstMBI	GATC	5 cut(s)	72, 135, 160, 315, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNSI	RCATGY	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	160, 315
BstYI	RGATCY	2 cut(s)	160, 315
Bsu36I	CCTNAGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	45, 205, 329, 461
CviAII	CATG	2 cut(s)	243, 467
CviJI	RGCY	4 cut(s)	60, 428, 515, 570
CviKI_1	RGCY	4 cut(s)	60, 428, 515, 570
CviQI	GTAC	4 cut(s)	45, 205, 329, 461
DdeI	CTNAG	2 cut(s)	37, 115
DpnI	GATC	5 cut(s)	74, 137, 162, 317, 360
DpnII	GATC	5 cut(s)	72, 135, 160, 315, 358
Eco130I	CCWWGG	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	246, 470
FaiI	YATR	8 cut(s)	23, 63, 244, 257, 282, 468, 477, 558
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FatI	CATG	2 cut(s)	242, 466
FbaI	TGATCA	1 cut(s)	135
FokI	GGATG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	2 cut(s)	246, 470
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	4 cut(s)	179, 275, 368, 433
Hpy188I	TCNGA	3 cut(s)	40, 52, 123
Hpy188III	TCNNGA	2 cut(s)	80, 362
HpyAV	CCTTC	3 cut(s)	143, 590, 646
HpyCH4IV	ACGT	2 cut(s)	68, 288
HpyCH4V	TGCA	4 cut(s)	242, 248, 441, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	2 cut(s)	37, 115
HpySE526I	ACGT	2 cut(s)	68, 288
Hsp92II	CATG	2 cut(s)	246, 470
Kpn2I	TCCGGA	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	5 cut(s)	72, 135, 160, 315, 358
LpnPI	CCDG	7 cut(s)	102, 246, 257, 317, 375, 498, 504
MaeII	ACGT	2 cut(s)	68, 288
MalI	GATC	5 cut(s)	74, 137, 162, 317, 360
MboI	GATC	5 cut(s)	72, 135, 160, 315, 358
MboII	GAAGA	1 cut(s)	407
MflI	RGATCY	2 cut(s)	160, 315
MhlI	GDGCHC	2 cut(s)	410, 603
MluCI	AATT	3 cut(s)	101, 183, 472
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	7 cut(s)	88, 124, 259, 439, 527, 532, 651
MroI	TCCGGA	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	635
MspI	CCGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	5 cut(s)	72, 135, 160, 315, 358
NlaIII	CATG	2 cut(s)	246, 470
NlaIV	GGNNCC	1 cut(s)	602
NspI	RCATGY	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	160, 315
RsaI	GTAC	4 cut(s)	46, 206, 330, 462
RsaNI	GTAC	4 cut(s)	45, 205, 329, 461
Sau3AI	GATC	5 cut(s)	72, 135, 160, 315, 358
Sau96I	GGNCC	1 cut(s)	514
ScaI	AGTACT	2 cut(s)	46, 462
SduI	GDGCHC	2 cut(s)	410, 603
SetI	ASST	8 cut(s)	71, 99, 121, 234, 265, 291, 430, 572
SfuI	TTCGAA	1 cut(s)	15
Sse9I	AATT	3 cut(s)	101, 183, 472
SsiI	CCGC	3 cut(s)	190, 551, 614
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	2 cut(s)	71, 291
TaqI	TCGA	3 cut(s)	15, 147, 531
TasI	AATT	3 cut(s)	101, 183, 472
TatI	WGTACW	4 cut(s)	44, 204, 328, 460
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	1 cut(s)	630
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	635
ZrmI	AGTACT	2 cut(s)	46, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.