pycom111g00070

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
N/A
Physical Location & Seq
Reverse (-)
73336 .. 75479
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
ATGGGGGAGTGGGTCGTTGGAGCTTTCATTAACCTTTTTGGCAGCATTGCCATCAACTTTGGAACTAACCTTCTCAAATTGGGGCATAACGAGAGAGAGAGACATTCAATACTAGAAAGTGATGGAGGAAATGGAAAGCTTCCTTTGAAGCCTATTATACAATATCAGACATGGAGAATTGGCTTTTTATTTTTCGCTCTTGGTAATTGCCTAAATTTCGTATCCTTCGGTTATGCTGCTCAGTCACTTCTTGCGGCACTGGGTTCTGTTCAGTTTGTATCCAACATTGCCTTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTTAAGGTAATGGTTGCCACAGCCTTTATCGTTCTTGGGAATATTTTTCTCGTTGCTTTTGGCAACCACCAGTCACCTGTATACACACCTCAGCAGCTGGCCGAGAAATACAGCAATATTGCATTCCTTTTGTACTGTATGATTTTGGTTTTAGTTGTTGCCTTGCATCACTCCATTTACAGGAGAGGAGAACTTTTGCATGCTGTTTCTGGCCAGGATCTGAGACCCTACTGGCATATGCTGCTTCCTTTTTCCTATGCTATAGTTTCAGGTGCTGTGATGGATCATTCTCAGTGCTGTTTGCAAAATCTCTATCTAACCTGCTGCGTTTGGCCTTGTCTAGTAGTTATCAGTTACATAGCTGGTTCACATACTCCATGCTCCTTTTATTTCTAA

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

8.41

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 6 - 163 4.8e-12 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 653
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 254
AclWI GGATC 2 cut(s) 549, 615
AcoI YGGCCR 2 cut(s) 423, 535
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 504
AgsI TTSAA 2 cut(s) 108, 148
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 4 cut(s) 23, 139, 421, 686
AluI AGCT 4 cut(s) 23, 139, 421, 686
Alw26I GTCTC 2 cut(s) 94, 541
AlwI GGATC 2 cut(s) 549, 615
AlwNI CAGNNNCTG 3 cut(s) 421, 544, 599
AoxI GGCC 3 cut(s) 423, 535, 656
ApeKI GCWGC 5 cut(s) 42, 236, 418, 565, 648
ApoI RAATTY 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 331, 390
BalI TGGCCA 1 cut(s) 537
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 5 cut(s) 54, 223, 430, 552, 635
BccI CCATC 3 cut(s) 59, 116, 598
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 2 cut(s) 232, 289
BcoDI GTCTC 2 cut(s) 94, 541
BfaI CTAG 2 cut(s) 113, 665
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 653
BfuI GTATCC 2 cut(s) 232, 289
BisI GCNGC 6 cut(s) 43, 237, 255, 419, 566, 649
BlsI GCNGC 6 cut(s) 44, 238, 256, 420, 567, 650
Bme1390I CCNGG 1 cut(s) 539
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 541
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 3 cut(s) 264, 394, 560
Bse3DI GCAATG 2 cut(s) 45, 285
BseBI CCWGG 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 2 cut(s) 45, 285
BseMII CTCAG 4 cut(s) 254, 428, 536, 629
BseNI ACTGG 3 cut(s) 264, 394, 560
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 5 cut(s) 54, 223, 430, 552, 635
BshFI GGCC 3 cut(s) 425, 537, 658
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 2 cut(s) 94, 541
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 3 cut(s) 425, 537, 658
Bso31I GGTCTC 1 cut(s) 541
Bsp143I GATC 2 cut(s) 541, 607
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 425, 537, 658
BspCNI CTCAG 4 cut(s) 253, 427, 537, 628
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 2 cut(s) 549, 615
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 45, 285
BsrI ACTGG 3 cut(s) 264, 394, 560
BssMI GATC 2 cut(s) 541, 607
BssNAI GTATAC 1 cut(s) 406
Bst1107I GTATAC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 325, 461
BstAPI GCANNNNNTGC 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 423, 525
BstDEI CTNAG 4 cut(s) 240, 414, 545, 615
BstKTI GATC 2 cut(s) 544, 610
BstMAI GTCTC 2 cut(s) 94, 541
BstMBI GATC 2 cut(s) 541, 607
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 5 cut(s) 54, 223, 430, 552, 635
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BstZ17I GTATAC 1 cut(s) 406
BsuI GTATCC 2 cut(s) 232, 289
BsuRI GGCC 3 cut(s) 425, 537, 658
BtsIMutI CAGTG 2 cut(s) 257, 623
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 2 cut(s) 423, 525
CaiI CAGNNNCTG 3 cut(s) 421, 544, 599
Csp6I GTAC 1 cut(s) 457
CviAII CATG 3 cut(s) 171, 524, 702
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 240, 414, 545, 615
DpnI GATC 2 cut(s) 543, 609
DpnII GATC 2 cut(s) 541, 607
EaeI YGGCCR 2 cut(s) 423, 535
Eco31I GGTCTC 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 537
FaeI CATG 3 cut(s) 174, 527, 705
FatI CATG 3 cut(s) 170, 523, 701
FauNDI CATATG 1 cut(s) 561
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 43, 237, 255, 419, 566, 649
Fsp4HI GCNGC 6 cut(s) 43, 237, 255, 419, 566, 649
FspBI CTAG 2 cut(s) 113, 665
GluI GCNGC 6 cut(s) 43, 237, 255, 419, 566, 649
HaeIII GGCC 3 cut(s) 425, 537, 658
Hin1II CATG 3 cut(s) 174, 527, 705
HindIII AAGCTT 1 cut(s) 137
HphI GGTGA 2 cut(s) 331, 390
Hpy166II GTNNAC 2 cut(s) 406, 692
Hpy188I TCNGA 2 cut(s) 168, 546
Hpy8I GTNNAC 2 cut(s) 406, 692
HpyAV CCTTC 2 cut(s) 80, 235
HpyCH4III ACNGT 2 cut(s) 325, 461
HpyCH4V TGCA 4 cut(s) 446, 490, 523, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 4 cut(s) 240, 414, 545, 615
Hsp92II CATG 3 cut(s) 174, 527, 705
Kzo9I GATC 2 cut(s) 541, 607
LmnI GCTCC 2 cut(s) 20, 710
Lsp1109I GCAGC 5 cut(s) 54, 223, 430, 552, 635
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 113, 665
MaeIII GTNAC 4 cut(s) 243, 319, 396, 677
MalI GATC 2 cut(s) 543, 609
MboI GATC 2 cut(s) 541, 607
MflI RGATCY 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 4 cut(s) 77, 177, 205, 214
MluNI TGGCCA 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 3 cut(s) 119, 423, 503
Mox20I TGGCCA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 537
MseI TTAA 3 cut(s) 30, 308, 327
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 565
NdeI CATATG 1 cut(s) 561
NdeII GATC 2 cut(s) 541, 607
NlaIII CATG 3 cut(s) 174, 527, 705
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 3 cut(s) 243, 319, 396
NspI RCATGY 1 cut(s) 527
PaeI GCATGC 1 cut(s) 527
PctI GAATGC 1 cut(s) 446
PkrI GCNGC 6 cut(s) 44, 238, 256, 420, 567, 650
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PstNI CAGNNNCTG 3 cut(s) 421, 544, 599
PsuI RGATCY 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 3 cut(s) 30, 308, 327
SatI GCNGC 6 cut(s) 43, 237, 255, 419, 566, 649
Sau3AI GATC 2 cut(s) 541, 607
ScrFI CCNGG 1 cut(s) 539
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 585
SphI GCATGC 1 cut(s) 527
Sse9I AATT 4 cut(s) 77, 177, 205, 214
SsiI CCGC 1 cut(s) 254
SspI AATATT 2 cut(s) 367, 442
SspMI CTAG 2 cut(s) 113, 665
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 325, 461
TasI AATT 4 cut(s) 77, 177, 205, 214
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 30, 308, 327
Tru9I TTAA 3 cut(s) 30, 308, 327
TscAI CASTG 2 cut(s) 264, 623
TseFI GTSAC 3 cut(s) 243, 319, 396
TseI GCWGC 5 cut(s) 42, 236, 418, 565, 648
Tsp45I GTSAC 3 cut(s) 243, 319, 396
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 2 cut(s) 264, 623
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 2 cut(s) 113, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.