Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

573340 .. 574239

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATTTCGATGAGGACGAATACATTAGCGACGACGACAATGTTGACGACGACGACGGATACTTTAGCGGCATCGAGGAAGAGGACGACTACTTTGGAGACGAATACCACTGCGACCAGTACTACTGCTTCGAGTTCGGCCAAGATCTCAAGTTTGAGAAGATGTTATTTCCTGAGGGGACGATCAAAGAGTGGGTTGCTAAAGATGAAGTGCGAAGATTTATAGCTGAGAAATTCAAAAAATTTCTACTCACCTTTGTCAATCATCACAGTAAAAATGTTCAGCAGCAACATGATGAAACTGAAGTTGAGTACGTGCGCCTCATCAATCAGATGGTGTCAGGTAAACATCAATATATATATATATATATAAGTATATGTATATTGTCCCTCTTAAAAATCTGGATCACAAAGATAAAAGATTTATGCTCCATTTGTTTTGTTGCAGCCAACAAGTGTAGTCTGGTGATCAATTACGAGCAGCTTCTCCCCGTTCAAATCCAAATTGCCCGTTGGATGATCAAATCCCCCCGACTTATTCTGGAAACCTTTGAAGATGCTGCCAAAAATGTTGTGCTTAATTTACACCCAAACTACAAAAATGTCCATCCAAGCATCTACGTTCGCATAACCAACCTCCGCAAGTGCGTTTCCATTCGCAACATTAGCGAAACCCATTTGGATGCCTTGATTTGCATTCGAGGGCTTGTGACCCGATGCTCTAACATATTTCCTAAGTTGCAACAGGTAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM2_N MCM_N MCM_OB

Protein Analysis

253

Amino Acids

29.77

Weight (kDa)

5.21

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	149 - 212	8.1e-09	MCM N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 640
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	233, 242
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	122, 314
AgsI	TTSAA	3 cut(s)	238, 497, 554
AluBI	AGCT	2 cut(s)	227, 484
AluI	AGCT	2 cut(s)	227, 484
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	286, 446, 481, 560
ApoI	RAATTY	2 cut(s)	233, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	244, 478
AxyI	CCTNAGG	1 cut(s)	174
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbvI	GCAGC	4 cut(s)	298, 458, 493, 547
BccI	CCATC	2 cut(s)	328, 615
BciVI	GTATCC	1 cut(s)	53
BclI	TGATCA	2 cut(s)	468, 519
BcoDI	GTCTC	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	5 cut(s)	70, 287, 447, 482, 561
BlsI	GCNGC	5 cut(s)	71, 288, 448, 483, 562
BmcAI	AGTACT	1 cut(s)	122
BmsI	GCATC	5 cut(s)	81, 547, 624, 673, 707
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	174
BseGI	GGATG	3 cut(s)	522, 607, 688
BseMII	CTCAG	2 cut(s)	165, 219
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	298, 458, 493, 547
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	193, 373
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	193, 373
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	145, 183, 405, 468, 519
BspACI	CCGC	2 cut(s)	69, 640
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	166, 220
BspPI	GGATC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	5 cut(s)	145, 183, 405, 468, 519
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	174, 228, 735
BstF5I	GGATG	3 cut(s)	522, 607, 688
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	148, 186, 408, 471, 522
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	5 cut(s)	145, 183, 405, 468, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	666
BstV1I	GCAGC	4 cut(s)	298, 458, 493, 547
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	522, 607, 688
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	121, 313
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	5 cut(s)	141, 227, 449, 484, 706
CviKI_1	RGCY	5 cut(s)	141, 227, 449, 484, 706
CviQI	GTAC	2 cut(s)	121, 313
DdeI	CTNAG	3 cut(s)	174, 228, 735
DpnI	GATC	5 cut(s)	147, 185, 407, 470, 521
DpnII	GATC	5 cut(s)	145, 183, 405, 468, 519
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	296
FaqI	GGGAC	2 cut(s)	193, 373
FatI	CATG	1 cut(s)	292
FbaI	TGATCA	2 cut(s)	468, 519
Fnu4HI	GCNGC	5 cut(s)	70, 287, 447, 482, 561
FokI	GGATG	3 cut(s)	529, 594, 695
Fsp4HI	GCNGC	5 cut(s)	70, 287, 447, 482, 561
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	5 cut(s)	70, 287, 447, 482, 561
HaeIII	GGCC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	244, 478
Hpy166II	GTNNAC	2 cut(s)	46, 347
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	173, 403, 542
Hpy8I	GTNNAC	2 cut(s)	46, 347
Hpy99I	CGWCG	5 cut(s)	35, 38, 53, 56, 59
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	2 cut(s)	315, 621
HpyCH4V	TGCA	3 cut(s)	446, 696, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	666
HpyF3I	CTNAG	3 cut(s)	174, 228, 735
HpySE526I	ACGT	2 cut(s)	315, 621
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	319
Ksp22I	TGATCA	2 cut(s)	468, 519
Kzo9I	GATC	5 cut(s)	145, 183, 405, 468, 519
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	7 cut(s)	131, 186, 327, 388, 449, 527, 731
Lsp1109I	GCAGC	4 cut(s)	298, 458, 493, 547
LweI	GCATC	5 cut(s)	81, 547, 624, 673, 707
MaeII	ACGT	2 cut(s)	315, 621
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	5 cut(s)	147, 185, 407, 470, 521
MboI	GATC	5 cut(s)	145, 183, 405, 468, 519
MboII	GAAGA	4 cut(s)	92, 172, 228, 566
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	7 cut(s)	233, 242, 472, 504, 580, 750, 754
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	8 cut(s)	7, 70, 76, 169, 332, 401, 647, 695
MseI	TTAA	3 cut(s)	395, 579, 753
MslI	CAYNNNNRTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	666
NdeII	GATC	5 cut(s)	145, 183, 405, 468, 519
NlaIII	CATG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	696
PkrI	GCNGC	5 cut(s)	71, 288, 448, 483, 562
Ppu21I	YACGTR	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	753
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	122, 314
RsaNI	GTAC	2 cut(s)	121, 313
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	395, 579, 753
SatI	GCNGC	5 cut(s)	70, 287, 447, 482, 561
Sau3AI	GATC	5 cut(s)	145, 183, 405, 468, 519
ScaI	AGTACT	1 cut(s)	122
SetI	ASST	9 cut(s)	229, 257, 318, 346, 486, 551, 624, 639, 750
SfaNI	GCATC	5 cut(s)	81, 547, 624, 673, 707
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	7 cut(s)	233, 242, 472, 504, 580, 750, 754
SsiI	CCGC	2 cut(s)	69, 640
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	2 cut(s)	318, 624
TaqI	TCGA	4 cut(s)	9, 75, 132, 700
TasI	AATT	7 cut(s)	233, 242, 472, 504, 580, 750, 754
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	395, 579, 753
Tru9I	TTAA	3 cut(s)	395, 579, 753
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	4 cut(s)	286, 446, 481, 560
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	2 cut(s)	222, 312
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	2 cut(s)	233, 242
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.