Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1104023 .. 1105418

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCCTTCACTCATACGCTTCCATTCGCTTCCATGAATTCATCTGCAGGTGTGGATCCATTGACCAATGCCCTCAAAACCAACCTGTCCCTCAATCCATCGTCTAATGGCAACGCCTCCAATGCCAAACCCTCAGCCAAGCAACCGTTTTTCATCGGTGTTGCCGGTGGGACTGCATCCGGAAAAACTACCGTCTGCAACATGATCATCTCCCAGCTGCGCGATCAGCGTGTTGTTCTTGTAAATCAAGATTCGTTTTATCATTCCTTGGATGCTGAGAAGCTGAAAAGGGTTCATGAGTACAATTTTGATCATCCCGAGGCATTCGACACAGAGCTTTTGCTTTCTTGCATGGAGCACTTAAAGCGCGGACAGGCAGTCAGCATCCCGAATTATGATTTTAAGACTCATCAAGCTATAGAACCAGCTCGGAAGGTTAACCCCCCAGACATAATCATTTTAGAGGGAATACTTGTTCTCCATGACCCTCGCGTCCGCGATCTCATGAACATGAAAATATTCGTCGACACAGTTACACCAGTGCAGATTCTGATGTACGCCTTTCTCGGAGAATTCAACGTGATACTGTTGAAAGAGGCAGAAATATCGAGAATGTGCTTGACCAGTATGCCAGATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

214

Amino Acids

23.65

Weight (kDa)

6.15

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	51 - 183	4.4e-29	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	38
AasI	GACNNNNNNGTC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	4 cut(s)	222, 369, 492, 498
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	2 cut(s)	369, 496
AclWI	GGATC	2 cut(s)	50, 63
AcsI	RAATTY	2 cut(s)	37, 572
AfaI	GTAC	2 cut(s)	302, 557
AgsI	TTSAA	2 cut(s)	577, 592
AhdI	GACNNNNNGTC	1 cut(s)	377
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	5 cut(s)	217, 283, 337, 416, 428
AluI	AGCT	5 cut(s)	217, 283, 337, 416, 428
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	50, 63
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	37, 572
Asp700I	GAANNNNTTC	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	222, 369
AvaI	CYCGRG	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	588, 622
BclI	TGATCA	2 cut(s)	204, 310
BfmI	CTRYAG	2 cut(s)	45, 417
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	57
BmsI	GCATC	3 cut(s)	185, 262, 393
Bpu10I	CCTNAGC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	267, 318
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	539, 624
BseAI	TCCGGA	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	267, 318
BseGI	GGATG	4 cut(s)	176, 277, 313, 384
BseMII	CTCAG	2 cut(s)	147, 267
BseNI	ACTGG	2 cut(s)	539, 624
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	563
Bsh1236I	CGCG	4 cut(s)	222, 369, 492, 498
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	165, 180
BslFI	GGGAC	2 cut(s)	73, 184
BsmFI	GGGAC	2 cut(s)	73, 184
BsmI	GAATGC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	5 cut(s)	55, 204, 223, 310, 499
BspACI	CCGC	2 cut(s)	369, 496
BspCNI	CTCAG	2 cut(s)	146, 268
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	4 cut(s)	222, 369, 492, 498
BspHI	TCATGA	2 cut(s)	295, 504
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	50, 63
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	539, 624
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	267, 318
BssMI	GATC	5 cut(s)	55, 204, 223, 310, 499
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	4 cut(s)	147, 193, 532, 588
BstDEI	CTNAG	2 cut(s)	133, 276
BstF5I	GGATG	4 cut(s)	176, 277, 313, 384
BstFNI	CGCG	4 cut(s)	222, 369, 492, 498
BstHHI	GCGC	2 cut(s)	222, 369
BstKTI	GATC	5 cut(s)	58, 207, 226, 313, 502
BstMBI	GATC	5 cut(s)	55, 204, 223, 310, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 226, 364
BstSFI	CTRYAG	2 cut(s)	45, 417
BstUI	CGCG	4 cut(s)	222, 369, 492, 498
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	176, 277, 313, 384
BtsIMutI	CAGTG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	550
CciI	TCATGA	2 cut(s)	295, 504
CfoI	GCGC	2 cut(s)	222, 369
Cfr10I	RCCGGY	1 cut(s)	164
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	301, 556
CviAII	CATG	7 cut(s)	34, 202, 296, 352, 482, 505, 511
CviJI	RGCY	6 cut(s)	137, 217, 283, 337, 416, 428
CviKI_1	RGCY	6 cut(s)	137, 217, 283, 337, 416, 428
CviQI	GTAC	2 cut(s)	301, 556
DdeI	CTNAG	2 cut(s)	133, 276
DpnI	GATC	5 cut(s)	57, 206, 225, 312, 501
DpnII	GATC	5 cut(s)	55, 204, 223, 310, 499
DrdI	GACNNNNNNGTC	1 cut(s)	491
DriI	GACNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eam1105I	GACNNNNNGTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	2 cut(s)	37, 572
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	7 cut(s)	37, 205, 299, 355, 485, 508, 514
FaqI	GGGAC	2 cut(s)	73, 184
FatI	CATG	7 cut(s)	33, 201, 295, 351, 481, 504, 510
FbaI	TGATCA	2 cut(s)	204, 310
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	4 cut(s)	163, 284, 300, 371
Fsp4HI	GCNGC	1 cut(s)	218
GlaI	GCGC	2 cut(s)	221, 368
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	217
HapII	CCGG	2 cut(s)	165, 180
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	222, 369
Hin1II	CATG	7 cut(s)	37, 205, 299, 355, 485, 508, 514
Hin6I	GCGC	2 cut(s)	220, 367
HinP1I	GCGC	2 cut(s)	220, 367
HincII	GTYRAC	2 cut(s)	439, 526
HindII	GTYRAC	2 cut(s)	439, 526
HinfI	GANTC	4 cut(s)	251, 406, 547, 635
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	165, 180
Hpy166II	GTNNAC	2 cut(s)	439, 526
Hpy188I	TCNGA	3 cut(s)	432, 552, 569
Hpy188III	TCNNGA	8 cut(s)	180, 248, 296, 317, 388, 505, 609, 639
Hpy8I	GTNNAC	2 cut(s)	439, 526
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	16, 427
HpyCH4III	ACNGT	4 cut(s)	147, 193, 532, 588
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	47, 176, 198, 351, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 226, 364
HpyF3I	CTNAG	2 cut(s)	133, 276
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	7 cut(s)	37, 205, 299, 355, 485, 508, 514
HspAI	GCGC	2 cut(s)	220, 367
Kpn2I	TCCGGA	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	204, 310
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	55, 204, 223, 310, 499
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	3 cut(s)	185, 262, 393
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	5 cut(s)	57, 206, 225, 312, 501
MboI	GATC	5 cut(s)	55, 204, 223, 310, 499
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	4 cut(s)	37, 304, 391, 572
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	83, 101, 127, 142, 313, 457, 498, 589
MroI	TCCGGA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	3 cut(s)	362, 402, 438
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	165, 180
Mva1269I	GAATGC	1 cut(s)	323
MvnI	CGCG	4 cut(s)	222, 369, 492, 498
MwoI	GCNNNNNNNGC	3 cut(s)	122, 226, 364
NdeII	GATC	5 cut(s)	55, 204, 223, 310, 499
NlaIII	CATG	7 cut(s)	37, 205, 299, 355, 485, 508, 514
NlaIV	GGNNCC	1 cut(s)	57
PagI	TCATGA	2 cut(s)	295, 504
PaqCI	CACCTGC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	251, 547, 635
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	302, 557
RsaNI	GTAC	2 cut(s)	301, 556
RseI	CAYNNNNRTG	1 cut(s)	509
SalI	GTCGAC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	362, 402, 438
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	5 cut(s)	55, 204, 223, 310, 499
SchI	GAGTC	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	9 cut(s)	52, 87, 219, 285, 339, 418, 430, 438, 582
SfaNI	GCATC	3 cut(s)	185, 262, 393
SfcI	CTRYAG	2 cut(s)	45, 417
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	37, 304, 391, 572
SsiI	CCGC	2 cut(s)	369, 496
SspI	AATATT	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	147, 193, 532, 588
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	327, 525, 608
TasI	AATT	4 cut(s)	37, 304, 391, 572
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	251, 547, 635
Tru1I	TTAA	3 cut(s)	362, 402, 438
Tru9I	TTAA	3 cut(s)	362, 402, 438
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	6 cut(s)	30, 50, 142, 284, 521, 527
TspRI	CASTG	1 cut(s)	546
XapI	RAATTY	2 cut(s)	37, 572
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.