pycom111g01890

3-oxoacyl- acyl-carrier-protein synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
N/A
Physical Location & Seq
Forward (+)
1134154 .. 1135160
1007 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGAAATCTTTGGCTGTGCCCCCTAAGGTTCAGAAAGCACTCGGCTGCGCAAGGAATCCTTTAGCGTATGATATTACAGCTGCTTGTAGTGGATTTATTTTGGATCTAGTATCAGCGTATTGTCACATTAAGGGTAACGACTTGGTTTACTTAGCTCTAAGGACTGGTTTTCTATATAAGGGCATTGAAGTCCCTCTCAGCTTCTAA

Protein Analysis

69

Amino Acids

7.35

Weight (kDa)

8.91

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 49
AclWI GGATC 1 cut(s) 111
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 3 cut(s) 80, 155, 201
AluI AGCT 3 cut(s) 80, 155, 201
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 45, 80
AspLEI GCGC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 32, 67
BfaI CTAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 46, 81
BlsI GCNGC 2 cut(s) 47, 82
Bse1I ACTGG 1 cut(s) 169
Bse21I CCTNAGG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 2 cut(s) 32, 67
BslFI GGGAC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 103
BspPI GGATC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 103
BstDEI CTNAG 4 cut(s) 24, 151, 158, 197
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 32, 67
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Bsu36I CCTNAGG 1 cut(s) 24
CfoI GCGC 1 cut(s) 50
CviJI RGCY 5 cut(s) 14, 45, 80, 155, 201
CviKI_1 RGCY 5 cut(s) 14, 45, 80, 155, 201
DdeI CTNAG 4 cut(s) 24, 151, 158, 197
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco81I CCTNAGG 1 cut(s) 24
FaiI YATR 3 cut(s) 69, 175, 177
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 46, 81
Fsp4HI GCNGC 2 cut(s) 46, 81
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 46, 81
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 148
HpyF3I CTNAG 4 cut(s) 24, 151, 158, 197
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 32, 67
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 122, 134
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 21
MnlI CCTC 1 cut(s) 204
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 80
NdeII GATC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 122
NsbI TGCGCA 1 cut(s) 49
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 47, 82
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 2 cut(s) 46, 81
Sau3AI GATC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 30, 82, 157, 203
SgeI CNNG 6 cut(s) 53, 63, 96, 119, 154, 177
SspMI CTAG 1 cut(s) 107
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 45, 80
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.