Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1727721 .. 1728116

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGACAGTTGTTGGAACTTCATCATCAAACTTAGATGGCATAAGAATGTCTGTAGACGAGGCAGATTTTTCCGAAATAGCAAGCACCTCGGAGTTGCAGGAGATAAGGCCTACAGAAAAGGCAAAGAAGAGGGTGAGGTTTGTTGTTCCAGAAACCCCACGAATCGATAGGGAAGCAGTAGAGGAGCTGCAGGAACTGATGGAAGCAAGGGAGGCAGGAATGGCATTTATATTAGGCCACTCGTACGTGAAGGCGAAGAGAGGTTCAAGTTTTATGAAGAAAATAGTGATCAATTTCGGGTACGATTTCTTGAGGAGGAATTTTCGAGGGCCGAGCTATGCTTTGAGCATTCCTCATGCATCTACTCTAGAGGTTGGGATGGTCTACCACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

6.85

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans_C	PF22776	51 - 130	9.8e-09	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	54, 384
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	2 cut(s)	245, 302
AgsI	TTSAA	1 cut(s)	267
AluBI	AGCT	2 cut(s)	187, 336
AluI	AGCT	2 cut(s)	187, 336
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	3 cut(s)	107, 235, 329
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	3 cut(s)	29, 193, 373
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BclI	TGATCA	1 cut(s)	288
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	3 cut(s)	51, 111, 188
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	329
BmsI	GCATC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpuEI	CTTGAG	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	2 cut(s)	247, 391
BsaJI	CCNNGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	197, 328
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	3 cut(s)	109, 237, 331
BshVI	ATCGAT	1 cut(s)	165
BsiWI	CGTACG	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	109, 237, 331
Bsp143I	GATC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	109, 237, 331
BspDI	ATCGAT	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	2 cut(s)	122, 251
BstBAI	YACGTR	2 cut(s)	247, 391
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 221
BstSFI	CTRYAG	3 cut(s)	51, 111, 188
BstV1I	GCAGC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	109, 237, 331
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	244, 301
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	5 cut(s)	109, 187, 237, 331, 336
CviKI_1	RGCY	5 cut(s)	109, 187, 237, 331, 336
CviQI	GTAC	2 cut(s)	244, 301
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	122, 251
EarI	CTCTTC	2 cut(s)	122, 251
Eco147I	AGGCCT	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	1 cut(s)	359
FaiI	YATR	6 cut(s)	41, 230, 275, 339, 357, 394
FatI	CATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	54, 384
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	109, 237, 331
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	55, 385
Hpy188I	TCNGA	2 cut(s)	73, 91
Hpy188III	TCNNGA	3 cut(s)	149, 310, 368
Hpy8I	GTNNAC	2 cut(s)	55, 385
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	2 cut(s)	246, 390
HpyCH4V	TGCA	3 cut(s)	97, 190, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 221
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	2 cut(s)	246, 390
Hsp92II	CATG	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	83, 162, 176, 201
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	246, 390
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	139, 268, 289
MluCI	AATT	2 cut(s)	292, 319
Mph1103I	ATGCAT	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	212, 221
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	109
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	189
Ppu21I	YACGTR	2 cut(s)	247, 391
PspLI	CGTACG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	245, 302
RsaNI	GTAC	2 cut(s)	244, 301
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	288
Sau96I	GGNCC	1 cut(s)	329
SetI	ASST	8 cut(s)	89, 140, 189, 249, 265, 338, 375, 393
SfaNI	GCATC	1 cut(s)	368
SfcI	CTRYAG	3 cut(s)	51, 111, 188
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	292, 319
SseBI	AGGCCT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	368
StuI	AGGCCT	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	2 cut(s)	249, 393
TaqI	TCGA	2 cut(s)	165, 325
TasI	AATT	2 cut(s)	292, 319
TfiI	GAWTC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	9, 290
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	54, 384
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.