Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2305018 .. 2305350

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGAGAAAAGGCTGAAGCAGAGAAAATCATGCAGATCAAGCGAGCAGAAGGAGAGGCAGAGTCCAAGTATTTGGTAGGGCTTGGCATAGCGCGCCAGCGGCAAGCCATTGTTGACGGGCTGAGAGACAGCGTGCTTGTCTTCTCCGAAAATGTTCCCAGAACAACAGCCAAGGATGTCGTGGACATGGTTTTGGTGACTCAATACTTTGACACCATGGAGGAGATAGGTGTATCCTCAAGGTCAGTCTGTTATCATCCCGCATGGGCCAGGTGCGGTCAACTACATTGCTTCGCAGATTCGAGAGGGTCTCCCTTAAGCCGATTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

111

Amino Acids

12.39

Weight (kDa)

6.72

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	94
AciI	CCGC	3 cut(s)	100, 261, 276
AcuI	CTGAAG	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	120, 315
AoxI	GGCC	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	94, 96
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	120, 315
BfrI	CTTAAG	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpuEI	CTTGAG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	171, 216
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	171, 216
BseGI	GGATG	2 cut(s)	181, 256
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	113
BsePI	GCGCGC	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	120, 315
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	100, 261, 276
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	171, 216
BssHII	GCGCGC	1 cut(s)	92
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	171, 216
Bst2UI	CCWGG	1 cut(s)	271
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	5 cut(s)	45, 94, 98, 105, 134
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	181, 256
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	94, 96
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	120, 315
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 93, 100
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	181, 256
Cac8I	GCNNGC	5 cut(s)	45, 94, 98, 105, 134
CfoI	GCGC	2 cut(s)	94, 96
Cfr13I	GGNCC	1 cut(s)	267
CviAII	CATG	4 cut(s)	31, 187, 217, 264
CviJI	RGCY	7 cut(s)	14, 82, 107, 121, 170, 269, 321
CviKI_1	RGCY	7 cut(s)	14, 82, 107, 121, 170, 269, 321
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	171, 216
Eco31I	GGTCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	171, 216
ErhI	CCWWGG	2 cut(s)	171, 216
FaeI	CATG	4 cut(s)	34, 190, 220, 267
FaiI	YATR	6 cut(s)	32, 89, 188, 218, 265, 328
FatI	CATG	4 cut(s)	30, 186, 216, 263
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	188, 243
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	2 cut(s)	93, 95
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	94, 96
Hin1II	CATG	4 cut(s)	34, 190, 220, 267
Hin6I	GCGC	2 cut(s)	92, 94
HinP1I	GCGC	2 cut(s)	92, 94
HincII	GTYRAC	2 cut(s)	115, 281
HindII	GTYRAC	2 cut(s)	115, 281
HinfI	GANTC	3 cut(s)	62, 199, 299
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	115, 184, 281
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	3 cut(s)	115, 184, 281
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 93, 100
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	34, 190, 220, 267
HspAI	GCGC	2 cut(s)	92, 94
Kzo9I	GATC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	110, 172, 256, 283
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	71, 193
MnlI	CCTC	4 cut(s)	49, 214, 247, 299
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	40, 93, 100
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	4 cut(s)	34, 190, 220, 267
NmuCI	GTSAC	1 cut(s)	196
PauI	GCGCGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	70, 193
PpsI	GAGTC	2 cut(s)	70, 193
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	267
PteI	GCGCGC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	71, 193
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	3 cut(s)	232, 245, 275
SmlI	CTYRAG	2 cut(s)	238, 316
SmoI	CTYRAG	2 cut(s)	238, 316
SsiI	CCGC	3 cut(s)	100, 261, 276
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	171, 216
TaqI	TCGA	1 cut(s)	302
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.