Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2347720 .. 2350499

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTACGGATTCGAAGCGATGACCTTCAACATTCACGGCGGGTACTTGGAGGCCATAGTGCGGGGTCACCGCTCCGGCCTCCTCACCGCTGCCGATTACAACAATTTGTGCCAGTGCGAGACGCTCGACGATATCAAGATGCACCTCTCTGCCACCGAGTACGGCCCCTACCTCCAAAACGAACCTTCCCCATTGCATACAACTACAATTGTGGAGAAGTGCACTCTTAAATTGGTTGATGAGTATAAGCACATGCTATGCCAAGCTACAGAGCCCTTGTCAACCTTTTTGGAGTATATTACATATGGTCACATGATAGACAATGTTGTCCTGATTGTTACTGGAACCTTGCATGAGAGAGATGTCCAGGAACTTTTGGAAAAATGCCACCCCTTGGGCATGTTTGACAGTATTGCCACCCTGGCTGTTGCACAGAATATGCGGGAGCTTTACAGATTGGTGCTTGTTGACACACCACTTGCTCCCTACTTTTCTGAATGCATTACATCTGAGGACCTGGATGACATGAACATTGAAATCATGAGGAACACTCTTTACAAGGCATACCTGGAAGACTTTTACAGGTTTTGTCAGAAACTAGGTGGTGCCACAGCGTTATTGTTGGATCGATCATGTCTGACTTACTTGCTTTTGAGGCTGACAGAAGGGCTGTCAATATTACCATCAATAGTATCGGAACTGAGCTTACTCGAGATGATCGCCGGAAGTTGTACTCTAGCTTTGGTTTACTCTATCCCTATGGCCATGAGGAACTTGCTGTTTGTGAGGACATTGATCAGGTCCGTGGTTGCATGGAAAAATATCCTCCTTATCAGTCTATTTTTTCAAAGCTATCCTATGGCGAGACCCAGATGCTTGACAAGGCATTTTATGAAGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

302

Amino Acids

34.42

Weight (kDa)

5.73

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 206	1.1e-62	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	5 cut(s)	39, 61, 70, 87, 442
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	1 cut(s)	762
AfaI	GTAC	4 cut(s)	5, 44, 161, 733
AfiI	CCNNNNNNNGG	2 cut(s)	60, 394
AgsI	TTSAA	3 cut(s)	28, 536, 848
AjnI	CCWGG	4 cut(s)	366, 420, 516, 567
AluBI	AGCT	5 cut(s)	266, 448, 705, 740, 852
AluI	AGCT	5 cut(s)	266, 448, 705, 740, 852
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	113, 859
Alw44I	GTGCAC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	4 cut(s)	51, 76, 163, 762
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	164, 514, 801
AsuHPI	GGTGA	2 cut(s)	59, 76
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	514, 801
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	691
BceAI	ACGGC	2 cut(s)	52, 178
BciT130I	CCWGG	4 cut(s)	368, 422, 518, 569
BclI	TGATCA	1 cut(s)	795
BcoDI	GTCTC	2 cut(s)	113, 859
BfaI	CTAG	2 cut(s)	599, 737
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	4 cut(s)	368, 422, 518, 569
Bme18I	GGWCC	2 cut(s)	514, 801
BmeT110I	CYCGRG	1 cut(s)	710
BmgT120I	GGNCC	3 cut(s)	164, 514, 801
BmiI	GGNNCC	3 cut(s)	166, 346, 607
BmrFI	CCNGG	4 cut(s)	368, 422, 518, 569
BmsI	GCATC	2 cut(s)	129, 863
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu14I	TTCGAA	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	859
BsaJI	CCNNGG	3 cut(s)	393, 420, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 394
Bse1I	ACTGG	2 cut(s)	112, 346
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	4 cut(s)	368, 422, 518, 569
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	3 cut(s)	393, 420, 804
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	60, 394
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	501, 692
BseNI	ACTGG	2 cut(s)	112, 346
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	4 cut(s)	53, 78, 165, 764
BshNI	GGYRCC	1 cut(s)	605
BshVI	ATCGAT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	2 cut(s)	75, 723
BslI	CCNNNNNNNGG	2 cut(s)	60, 394
BsmAI	GTCTC	2 cut(s)	113, 859
BsmBI	CGTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	4 cut(s)	53, 78, 165, 764
Bso31I	GGTCTC	1 cut(s)	859
BsoBI	CYCGRG	1 cut(s)	710
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	224, 276
Bsp143I	GATC	4 cut(s)	625, 629, 717, 795
BspACI	CCGC	5 cut(s)	39, 61, 70, 87, 442
BspANI	GGCC	4 cut(s)	53, 78, 165, 764
BspCNI	CTCAG	2 cut(s)	502, 693
BspDI	ATCGAT	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	3 cut(s)	166, 346, 607
BspPI	GGATC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	859
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	112, 346
BssECI	CCNNGG	3 cut(s)	393, 420, 804
BssMI	GATC	4 cut(s)	625, 629, 717, 795
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	4 cut(s)	368, 422, 518, 569
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	510, 701
BstDSI	CCRYGG	1 cut(s)	804
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	628, 632, 720, 798
BstMAI	GTCTC	2 cut(s)	113, 859
BstMBI	GATC	4 cut(s)	625, 629, 717, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 655
BstNI	CCWGG	4 cut(s)	368, 422, 518, 569
BstNSI	RCATGY	2 cut(s)	256, 403
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	4 cut(s)	366, 420, 516, 567
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	53, 78, 165, 764
BsuTUI	ATCGAT	1 cut(s)	628
BtgI	CCRYGG	1 cut(s)	804
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	119
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	164, 514, 801
ClaI	ATCGAT	1 cut(s)	628
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	4 cut(s)	4, 43, 160, 732
CviAII	CATG	9 cut(s)	253, 313, 353, 400, 526, 541, 633, 766, 813
CviQI	GTAC	4 cut(s)	4, 43, 160, 732
DdeI	CTNAG	2 cut(s)	510, 701
DpnI	GATC	4 cut(s)	627, 631, 719, 797
DpnII	GATC	4 cut(s)	625, 629, 717, 795
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	859
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	514, 801
Eco88I	CYCGRG	1 cut(s)	710
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	4 cut(s)	366, 420, 516, 567
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	9 cut(s)	256, 316, 356, 403, 529, 544, 636, 769, 816
FatI	CATG	9 cut(s)	252, 312, 352, 399, 525, 540, 632, 765, 812
FauI	CCCGC	3 cut(s)	32, 54, 435
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	599, 737
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	53, 78, 165, 764
HapII	CCGG	2 cut(s)	75, 723
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	9 cut(s)	256, 316, 356, 403, 529, 544, 636, 769, 816
HincII	GTYRAC	2 cut(s)	282, 469
HindII	GTYRAC	2 cut(s)	282, 469
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	75, 723
HphI	GGTGA	2 cut(s)	59, 76
Hpy166II	GTNNAC	4 cut(s)	222, 282, 469, 748
Hpy188I	TCNGA	5 cut(s)	496, 511, 594, 639, 697
Hpy188III	TCNNGA	4 cut(s)	136, 331, 541, 712
Hpy8I	GTNNAC	4 cut(s)	222, 282, 469, 748
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	34, 195, 659
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	7 cut(s)	142, 196, 222, 352, 431, 501, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 655
HpyF3I	CTNAG	2 cut(s)	510, 701
Hsp92II	CATG	9 cut(s)	256, 316, 356, 403, 529, 544, 636, 769, 816
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	625, 629, 717, 795
LmnI	GCTCC	3 cut(s)	77, 445, 487
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	129, 863
MaeI	CTAG	2 cut(s)	599, 737
MaeIII	GTNAC	3 cut(s)	65, 308, 337
MalI	GATC	4 cut(s)	627, 631, 719, 797
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	4 cut(s)	625, 629, 717, 795
MboII	GAAGA	1 cut(s)	584
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	224, 276
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	3 cut(s)	103, 207, 230
MluNI	TGGCCA	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	764
Mph1103I	ATGCAT	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	75, 723
MspR9I	CCNGG	4 cut(s)	368, 422, 518, 569
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	4 cut(s)	368, 422, 518, 569
MwoI	GCNNNNNNNGC	2 cut(s)	422, 655
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	625, 629, 717, 795
NlaIII	CATG	9 cut(s)	256, 316, 356, 403, 529, 544, 636, 769, 816
NlaIV	GGNNCC	3 cut(s)	166, 346, 607
NmuCI	GTSAC	2 cut(s)	65, 308
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	2 cut(s)	256, 403
NspV	TTCGAA	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	710
PagI	TCATGA	1 cut(s)	540
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	4 cut(s)	366, 420, 516, 567
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	4 cut(s)	366, 420, 516, 567
PspN4I	GGNNCC	3 cut(s)	166, 346, 607
PspPI	GGNCC	3 cut(s)	164, 514, 801
PspPPI	RGGWCCY	1 cut(s)	514
PsrI	GAACNNNNNNTAC	4 cut(s)	539, 571, 690, 722
RsaI	GTAC	4 cut(s)	5, 44, 161, 733
RsaNI	GTAC	4 cut(s)	4, 43, 160, 732
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	625, 629, 717, 795
Sau96I	GGNCC	3 cut(s)	164, 514, 801
ScrFI	CCNGG	4 cut(s)	368, 422, 518, 569
SduI	GDGCHC	2 cut(s)	224, 276
SfaNI	GCATC	2 cut(s)	129, 863
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	2 cut(s)	514, 801
SlaI	CTCGAG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	3 cut(s)	103, 207, 230
SsiI	CCGC	5 cut(s)	39, 61, 70, 87, 442
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	2 cut(s)	599, 737
StyD4I	CCNGG	4 cut(s)	366, 420, 516, 567
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	12, 126, 628, 711
TasI	AATT	3 cut(s)	103, 207, 230
TatI	WGTACW	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	65, 308
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	65, 308
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	2 cut(s)	21, 793
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	514, 801
XceI	RCATGY	2 cut(s)	256, 403
XhoI	CTCGAG	1 cut(s)	710
XspI	CTAG	2 cut(s)	599, 737
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.