pycom111g04190
MYB Family

Myb-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
N/A
Physical Location & Seq
Forward (+)
2539086 .. 2539454
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAAAAACCCACCAAAGAAATCAGCTAGCTTAACCAACTTGGCTAATAATAAGACAGATTATCAGCATTACTCATCTAGTGAGGGAACCACATCTGTGGCAAATACTGCCAATAGTGGCAATGTTGAGCTATCTGATACGTTTGAGTCTCTGTTCGGTTTTGAGTCCTCAAATTCCGATTTGTCTCCGTCTATGTCGCCGGACAGCTTATTCCAAGGCGAAAGCAAGCCGGATCTTATCAGCGATCAGTTGCCGCTGTCTTTTCTTGAGAAGTGGCTGTTTGATGAAAGTGCTGCTCCTGCTACTCTAGGGAAGGACCACTTCTTTAGTGATATGCTATCAGATCATGGAAATGCTAACTTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.25

Weight (kDa)

4.38

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 4 cut(s) 26, 30, 130, 207
AluI AGCT 4 cut(s) 26, 30, 130, 207
Alw26I GTCTC 2 cut(s) 153, 189
AlwI GGATC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 316
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 153, 189
BfaI CTAG 3 cut(s) 27, 78, 308
BisI GCNGC 2 cut(s) 254, 294
BlsI GCNGC 2 cut(s) 255, 295
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 280
BsiSI CCGG 2 cut(s) 200, 230
BsmAI GTCTC 2 cut(s) 153, 189
Bsp143I GATC 3 cut(s) 232, 244, 343
BspACI CCGC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 88
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 232, 244, 343
BssT1I CCWWGG 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 28, 227
BstKTI GATC 3 cut(s) 235, 247, 346
BstMAI GTCTC 2 cut(s) 153, 189
BstMBI GATC 3 cut(s) 232, 244, 343
BstMWI GCNNNNNNNGC 2 cut(s) 107, 299
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 232
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 28, 227
Cfr13I GGNCC 1 cut(s) 316
CviAII CATG 1 cut(s) 347
CviJI RGCY 7 cut(s) 26, 30, 44, 130, 207, 229, 277
CviKI_1 RGCY 7 cut(s) 26, 30, 44, 130, 207, 229, 277
DpnI GATC 3 cut(s) 234, 246, 345
DpnII GATC 3 cut(s) 232, 244, 343
Eco130I CCWWGG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 350
FaiI YATR 3 cut(s) 194, 335, 348
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 254, 294
Fsp4HI GCNGC 2 cut(s) 254, 294
FspBI CTAG 3 cut(s) 27, 78, 308
GluI GCNGC 2 cut(s) 254, 294
HapII CCGG 2 cut(s) 200, 230
Hin1II CATG 1 cut(s) 350
HinfI GANTC 2 cut(s) 146, 164
HpaII CCGG 2 cut(s) 200, 230
Hpy188I TCNGA 4 cut(s) 136, 178, 343, 368
Hpy188III TCNNGA 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 299
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 3 cut(s) 232, 244, 343
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 3 cut(s) 213, 243, 312
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 3 cut(s) 27, 78, 308
MaeII ACGT 1 cut(s) 140
MalI GATC 3 cut(s) 234, 246, 345
MboI GATC 3 cut(s) 232, 244, 343
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 172
MlyI GAGTC 2 cut(s) 155, 173
MnlI CCTC 2 cut(s) 76, 178
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 2 cut(s) 95, 351
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 2 cut(s) 200, 230
MwoI GCNNNNNNNGC 2 cut(s) 107, 299
NdeII GATC 3 cut(s) 232, 244, 343
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 95
PkrI GCNGC 2 cut(s) 255, 295
PleI GAGTC 2 cut(s) 154, 172
PpsI GAGTC 2 cut(s) 154, 172
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 2 cut(s) 95, 351
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 2 cut(s) 254, 294
Sau3AI GATC 3 cut(s) 232, 244, 343
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 155, 173
SetI ASST 5 cut(s) 28, 32, 132, 143, 209
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 2 cut(s) 95, 351
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 254
SspMI CTAG 3 cut(s) 27, 78, 308
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 143
TasI AATT 1 cut(s) 172
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 17, 300
TspGWI ACGGA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 172
XspI CTAG 3 cut(s) 27, 78, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.