pycom111g04880

disease resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
N/A
Physical Location & Seq
Forward (+)
2963722 .. 2968554
4833 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGTCTGTGGCTTCTGTCGGAATGGGTGCTCTGAGAACGGCATTTCAAATACTGTTTGATGCTGTAAAATCAGCGCAGGAGGAAACCACAATGTTCGAGCACCTCCTCGGTGACATCAAATCTCTACTCTGGACTTTCTACAGCCACTCATCAAAGACATTGAAAATTATAAGTCGAAAGAGGGACTGGAATATTTTGCAATACAAATGGAGGAGGGAGCAAATCTTGTCCAAAAGTGCAGCAAAGTTGGCGTGTGGAGAAAATACAAATACACCAACAAGCTTCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.06

Weight (kDa)

9.66

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AgsI TTSAA 2 cut(s) 47, 163
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 2 cut(s) 31, 102
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 31, 102
BbvI GCAGC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmsI GCATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 2 cut(s) 95, 226
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 31, 102
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 31, 102
BspCNI CTCAG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 76
CviJI RGCY 3 cut(s) 11, 144, 282
CviKI_1 RGCY 3 cut(s) 11, 144, 282
DdeI CTNAG 1 cut(s) 32
FaiI YATR 1 cut(s) 170
FaqI GGGAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 280
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 20, 33
Hpy188III TCNNGA 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 199, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 32
HspAI GCGC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 62, 115, 172
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 31, 102
MluCI AATT 1 cut(s) 165
MnlI CCTC 6 cut(s) 73, 113, 116, 174, 204, 207
MwoI GCNNNNNNNGC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 170
SatI GCNGC 1 cut(s) 240
SduI GDGCHC 2 cut(s) 31, 102
SetI ASST 2 cut(s) 105, 284
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 139
SgeI CNNG 7 cut(s) 89, 109, 119, 142, 199, 238, 264
Sse9I AATT 1 cut(s) 165
SspI AATATT 1 cut(s) 193
TaaI ACNGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 96, 175
TasI AATT 1 cut(s) 165
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.