pycom111g05140

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
N/A
Physical Location & Seq
Reverse (-)
3306967 .. 3308322
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGCAGATTTTTGTATTTTGGCTGGTTCTTCCAAAATTGATCAAAGAAGAGAAGGTTAAGGTGATAATGACCATTCTCCTCTTAATTTTTTTGTTCCAATTCCTCCCAAAAGTCTACCACAGCATCTCCTTGATGAGAAGAATGCAAAAGGTCACAGGCTACGTATTTGGCACCATTTGGTGGGGTTTTGGCCTCAACCTCATTGCCTACTTCATAGCTTCTCACGTTGCCGGGGGATGCTGGTATGTGCTCGCGATTCAGCGCGTAGCTTCGTGCCTAAGGCAGCATTGTGACCAAAATGTCAAATGTAATCTCTCTCTGTCTTGCTCGGACGAAGTTTGCTACCAGTTTTTGTTACCGGCCGCCACGATTGGAAACCCTTGTGGAGGGAACACGACAACAAGCGTGATGAGAAAGCCACCACTGTGCTTGGATGTAAATGGCACGTTCAACTATGGAATCTATCAGTGGGCTCTTCCTGTCATATCTAGCAACTCCCTTGCTATTAAGATTCTCTATCCCATATTCTGGGGCTTGATGACTCTCGGCACATTTGGGAATGATCTTGAACCTACAAGTCACTGGTTAGAAGTGATTTTCAGCATATGCATTGTGCTTAGTGGCTTGCTGCTCTTCACTTTGTTGATTGGAAACATTCAGGTATTTCTCCATGCTGTTATGGCAAAGAAAAGGAAGATGCAGTTGAGGTGCAGAGACATGGAATGGTGGATGAAGCGGAGGCAGTTGCCGTCTGGATTGAGACGAAGAGTACGCCATTACGAAAGGCATAGATGGGGCTCCGAAGGGAGATTAAGCGCCATTTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

277

Amino Acids

31.83

Weight (kDa)

9.69

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 2 cut(s) 180, 528
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 254, 264
AciI CCGC 2 cut(s) 363, 736
AcoI YGGCCR 1 cut(s) 360
AfaI GTAC 1 cut(s) 771
AfiI CCNNNNNNNGG 3 cut(s) 180, 386, 528
AgsI TTSAA 2 cut(s) 451, 569
AleI CACNNNNGTG 1 cut(s) 424
AluBI AGCT 2 cut(s) 218, 269
AluI AGCT 2 cut(s) 218, 269
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 708, 754
AoxI GGCC 2 cut(s) 190, 360
ApeKI GCWGC 2 cut(s) 283, 628
AspLEI GCGC 2 cut(s) 264, 818
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 278
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 475, 800
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 295, 615
BccI CCATC 1 cut(s) 786
BceAI ACGGC 1 cut(s) 733
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 708, 754
BfaI CTAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 819
BisI GCNGC 3 cut(s) 284, 363, 629
BlsI GCNGC 3 cut(s) 285, 364, 630
Bme1390I CCNGG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 172, 799
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 3 cut(s) 132, 227, 687
BpuMI CCSGG 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 386, 528
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 2 cut(s) 346, 587
Bse21I CCTNAGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 3 cut(s) 242, 439, 735
BseLI CCNNNNNNNGG 3 cut(s) 180, 386, 528
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 346, 587
BseRI GAGGAG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 295, 615
BsgI GTGCAG 1 cut(s) 730
Bsh1236I CGCG 2 cut(s) 254, 264
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 2 cut(s) 192, 362
BshNI GGYRCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 231, 359
BslI CCNNNNNNNGG 3 cut(s) 180, 386, 528
BsmAI GTCTC 2 cut(s) 708, 754
BsmBI CGTCTC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 2 cut(s) 192, 362
Bsp1286I GDGCHC 3 cut(s) 252, 475, 800
Bsp143I GATC 2 cut(s) 39, 562
Bsp68I TCGCGA 1 cut(s) 254
BspACI CCGC 2 cut(s) 363, 736
BspANI GGCC 2 cut(s) 192, 362
BspFNI CGCG 2 cut(s) 254, 264
BspLI GGNNCC 2 cut(s) 172, 799
BspQI GCTCTTC 2 cut(s) 480, 638
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 2 cut(s) 346, 587
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 39, 562
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 4 cut(s) 42, 480, 638, 760
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 252, 626
BstDEI CTNAG 3 cut(s) 278, 617, 828
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 242, 439, 735
BstFNI CGCG 2 cut(s) 254, 264
BstH2I RGCGCY 1 cut(s) 819
BstHHI GCGC 2 cut(s) 264, 818
BstKTI GATC 2 cut(s) 42, 565
BstMAI GTCTC 2 cut(s) 708, 754
BstMBI GATC 2 cut(s) 39, 562
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 680, 824
BstSCI CCNGG 1 cut(s) 230
BstSNI TACGTA 1 cut(s) 163
BstUI CGCG 2 cut(s) 254, 264
BstV1I GCAGC 2 cut(s) 295, 615
BstZI CGGCCG 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 2 cut(s) 192, 362
BtsCI GGATG 3 cut(s) 242, 439, 735
BtsIMutI CAGTG 3 cut(s) 422, 473, 580
BtuMI TCGCGA 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 252, 626
CfoI GCGC 2 cut(s) 264, 818
Cfr10I RCCGGY 1 cut(s) 358
Csp6I GTAC 1 cut(s) 770
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 2 cut(s) 671, 718
CviQI GTAC 1 cut(s) 770
DdeI CTNAG 3 cut(s) 278, 617, 828
DpnI GATC 2 cut(s) 41, 564
DpnII GATC 2 cut(s) 39, 562
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 42, 480, 638, 760
EarI CTCTTC 4 cut(s) 42, 480, 638, 760
EclXI CGGCCG 1 cut(s) 360
Eco105I TACGTA 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 475, 800
Eco52I CGGCCG 1 cut(s) 360
Eco81I CCTNAGG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 2 cut(s) 475, 800
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 2 cut(s) 674, 721
FatI CATG 2 cut(s) 670, 717
FauNDI CATATG 1 cut(s) 605
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 284, 363, 629
FokI GGATG 3 cut(s) 249, 446, 742
FriOI GRGCYC 2 cut(s) 475, 800
Fsp4HI GCNGC 3 cut(s) 284, 363, 629
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 263, 817
GluI GCNGC 3 cut(s) 284, 363, 629
HaeII RGCGCY 1 cut(s) 819
HaeIII GGCC 2 cut(s) 192, 362
HapII CCGG 2 cut(s) 231, 359
HhaI GCGC 2 cut(s) 264, 818
Hin1II CATG 2 cut(s) 674, 721
Hin6I GCGC 2 cut(s) 262, 816
HinP1I GCGC 2 cut(s) 262, 816
HinfI GANTC 4 cut(s) 256, 459, 511, 541
HpaII CCGG 2 cut(s) 231, 359
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 331, 802
Hpy188III TCNNGA 3 cut(s) 253, 566, 753
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 46, 797
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 3 cut(s) 162, 225, 446
HpyCH4V TGCA 5 cut(s) 4, 145, 609, 700, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 680, 824
HpyF3I CTNAG 3 cut(s) 278, 617, 828
HpySE526I ACGT 3 cut(s) 162, 225, 446
Hsp92II CATG 2 cut(s) 674, 721
HspAI GCGC 2 cut(s) 262, 816
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 562
LguI GCTCTTC 2 cut(s) 480, 638
LmnI GCTCC 1 cut(s) 803
Lsp1109I GCAGC 2 cut(s) 295, 615
LweI GCATC 3 cut(s) 132, 227, 687
MaeI CTAG 1 cut(s) 489
MaeII ACGT 3 cut(s) 162, 225, 446
MaeIII GTNAC 4 cut(s) 151, 290, 354, 578
MalI GATC 2 cut(s) 41, 564
MboI GATC 2 cut(s) 39, 562
MboII GAAGA 7 cut(s) 20, 59, 150, 467, 625, 706, 777
MhlI GDGCHC 3 cut(s) 252, 475, 800
MluCI AATT 3 cut(s) 35, 84, 98
MlyI GAGTC 1 cut(s) 535
MnlI CCTC 7 cut(s) 89, 113, 203, 209, 380, 699, 732
Mph1103I ATGCAT 1 cut(s) 611
MseI TTAA 4 cut(s) 57, 83, 507, 812
MslI CAYNNNNRTG 1 cut(s) 424
MspI CCGG 2 cut(s) 231, 359
MspR9I CCNGG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 2 cut(s) 254, 264
MwoI GCNNNNNNNGC 2 cut(s) 680, 824
NciI CCSGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 605
NdeII GATC 2 cut(s) 39, 562
NlaIII CATG 2 cut(s) 674, 721
NlaIV GGNNCC 2 cut(s) 172, 799
NmeAIII GCCGAG 1 cut(s) 525
NmuCI GTSAC 3 cut(s) 151, 290, 578
NruI TCGCGA 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 424
PciSI GCTCTTC 2 cut(s) 480, 638
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 256, 459, 511
PflMI CCANNNNNTGG 2 cut(s) 180, 528
PkrI GCNGC 3 cut(s) 285, 364, 630
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 172, 799
RruI TCGCGA 1 cut(s) 254
RsaI GTAC 1 cut(s) 771
RsaNI GTAC 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 424
SapI GCTCTTC 2 cut(s) 480, 638
SaqAI TTAA 4 cut(s) 57, 83, 507, 812
SatI GCNGC 3 cut(s) 284, 363, 629
Sau3AI GATC 2 cut(s) 39, 562
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 3 cut(s) 252, 475, 800
SfaNI GCATC 3 cut(s) 132, 227, 687
SmiMI CAYNNNNRTG 1 cut(s) 424
SnaBI TACGTA 1 cut(s) 163
Sse9I AATT 3 cut(s) 35, 84, 98
SsiI CCGC 2 cut(s) 363, 736
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 3 cut(s) 165, 228, 449
TasI AATT 3 cut(s) 35, 84, 98
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 3 cut(s) 256, 459, 511
Tru1I TTAA 4 cut(s) 57, 83, 507, 812
Tru9I TTAA 4 cut(s) 57, 83, 507, 812
TscAI CASTG 3 cut(s) 429, 473, 587
TseFI GTSAC 3 cut(s) 151, 290, 578
TseI GCWGC 2 cut(s) 283, 628
Tsp45I GTSAC 3 cut(s) 151, 290, 578
TspDTI ATGAA 2 cut(s) 202, 746
TspRI CASTG 3 cut(s) 429, 473, 587
Van91I CCANNNNNTGG 2 cut(s) 180, 528
XagI CCTNNNNNAGG 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 489
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.