Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3611505 .. 3612540

Gene Structure 1036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACAGCACAAGAGGATACACCAAAGAAGTCGTATGCATCAATTGTTAGAGTTCCCAAAGGGAGTCCAGGGCCAAATAAGGTTTATGTGCCAACTAATACTGTAAGAGCGGCTCCTAAGGTAGCGGAAACTAGTTTGCCTGGGCCAACTGCACCTGCTTCGGTGCCTGAAGCATCAGCCCCAACTAGCACTAGTGCCCTAGAGAGTGGTGATACTAATGAGGAAGTTGAGGGCTATTCTGTTTACATAAGGAATTTGCCTTTAAACGTGACGTCTGATCAGCTTGAGGAAGAATTCAAGAAATTTGGACCAATAAAGCAAGGAGGCGTCCAAGTCCGGAATAAGAAACTCCAGGGCCACTGTTTTGGATTTGTTGAGTTTGAGTCTTCAAGTTCCATGAATAGTGCCATCCAGGTAGACTTGAACATTATGATTAGGATATGGCAATTCTTTCTTCCACTGTCTTCTTGTCGGGCTTGTATTTTGGTACTCTGTTCTATCAAGTTTAGATGGTCTTTCACCGTAGCCGATGTGAATTACAATCTTCATAGCATGTTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

188

Amino Acids

20.49

Weight (kDa)

7.64

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	81 - 138	1e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	2 cut(s)	110, 125
AcsI	RAATTY	3 cut(s)	253, 293, 302
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	272, 327
AfaI	GTAC	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	298, 390, 424
AhlI	ACTAGT	2 cut(s)	131, 191
AjnI	CCWGG	4 cut(s)	67, 139, 351, 411
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	3 cut(s)	71, 143, 355
ApoI	RAATTY	3 cut(s)	253, 293, 302
AspS9I	GGNCC	4 cut(s)	71, 143, 308, 355
AsuHPI	GGTGA	2 cut(s)	221, 511
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	378, 456
BccI	CCATC	2 cut(s)	416, 504
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	4 cut(s)	69, 141, 353, 413
BciVI	GTATCC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	277
BcuI	ACTAGT	2 cut(s)	131, 191
BfaI	CTAG	4 cut(s)	132, 186, 192, 200
BfuAI	ACCTGC	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	69, 141, 353, 413
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	4 cut(s)	71, 143, 308, 355
BmiI	GGNNCC	2 cut(s)	114, 165
BmrFI	CCNGG	4 cut(s)	69, 141, 353, 413
BmsI	GCATC	2 cut(s)	47, 182
BpiI	GAAGAC	2 cut(s)	378, 456
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	272, 327
BsaJI	CCNNGG	3 cut(s)	68, 140, 352
BsaWI	WCCGGW	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	4 cut(s)	69, 141, 353, 413
BseDI	CCNNGG	3 cut(s)	68, 140, 352
BseGI	GGATG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	73, 145, 357
BshNI	GGYRCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	337
BsnI	GGCC	3 cut(s)	73, 145, 357
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	2 cut(s)	110, 125
BspANI	GGCC	3 cut(s)	73, 145, 357
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	114, 165
BspMI	ACCTGC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	68, 140, 352
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	2 cut(s)	272, 327
Bst2UI	CCWGG	4 cut(s)	69, 141, 353, 413
Bst4CI	ACNGT	4 cut(s)	103, 362, 462, 523
BstACI	GRCGYC	2 cut(s)	272, 327
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	4 cut(s)	69, 141, 353, 413
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	4 cut(s)	67, 139, 351, 411
BstSLI	GKGCMC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	378, 456
BstXI	CCANNNNNNTGG	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	73, 145, 357
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	358, 458
BveI	ACCTGC	1 cut(s)	163
Cfr13I	GGNCC	4 cut(s)	71, 143, 308, 355
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	2 cut(s)	397, 553
CviJI	RGCY	9 cut(s)	73, 113, 145, 179, 234, 283, 357, 476, 527
CviKI_1	RGCY	9 cut(s)	73, 113, 145, 179, 234, 283, 357, 476, 527
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	4 cut(s)	67, 139, 351, 411
EcoT22I	ATGCAT	1 cut(s)	40
FaeI	CATG	2 cut(s)	400, 556
FaiI	YATR	8 cut(s)	36, 87, 248, 398, 431, 442, 549, 554
FatI	CATG	2 cut(s)	396, 552
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	4 cut(s)	132, 186, 192, 200
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	73, 145, 357
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	2 cut(s)	272, 327
Hin1II	CATG	2 cut(s)	400, 556
HinfI	GANTC	2 cut(s)	64, 383
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	221, 511
Hpy166II	GTNNAC	2 cut(s)	244, 418
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	298, 337
Hpy8I	GTNNAC	2 cut(s)	244, 418
HpyCH4III	ACNGT	4 cut(s)	103, 362, 462, 523
HpyCH4IV	ACGT	2 cut(s)	267, 272
HpyCH4V	TGCA	2 cut(s)	38, 152
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	267, 272
Hsp92I	GRCGYC	2 cut(s)	272, 327
Hsp92II	CATG	2 cut(s)	400, 556
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	2 cut(s)	47, 182
MaeI	CTAG	4 cut(s)	132, 186, 192, 200
MaeII	ACGT	2 cut(s)	267, 272
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	279
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	302, 378, 446, 456, 536
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	7 cut(s)	42, 253, 293, 302, 446, 535, 558
MlyI	GAGTC	2 cut(s)	73, 392
MnlI	CCTC	5 cut(s)	7, 214, 223, 280, 317
Mph1103I	ATGCAT	1 cut(s)	40
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	3 cut(s)	263, 557, 562
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	4 cut(s)	69, 141, 353, 413
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	4 cut(s)	69, 141, 353, 413
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	400, 556
NlaIV	GGNNCC	2 cut(s)	114, 165
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	1 cut(s)	556
PaqCI	CACCTGC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	72, 391
PpsI	GAGTC	2 cut(s)	72, 391
Psp6I	CCWGG	4 cut(s)	67, 139, 351, 411
PspGI	CCWGG	4 cut(s)	67, 139, 351, 411
PspN4I	GGNNCC	2 cut(s)	114, 165
PspPI	GGNCC	4 cut(s)	71, 143, 308, 355
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	3 cut(s)	263, 557, 562
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	4 cut(s)	71, 143, 308, 355
SchI	GAGTC	2 cut(s)	73, 392
ScrFI	CCNGG	4 cut(s)	69, 141, 353, 413
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	84, 123, 157, 270, 275, 285, 417
SfaNI	GCATC	2 cut(s)	47, 182
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SpeI	ACTAGT	2 cut(s)	131, 191
Sse9I	AATT	7 cut(s)	42, 253, 293, 302, 446, 535, 558
SsiI	CCGC	2 cut(s)	110, 125
SspMI	CTAG	4 cut(s)	132, 186, 192, 200
StyD4I	CCNGG	4 cut(s)	67, 139, 351, 411
TaaI	ACNGT	4 cut(s)	103, 362, 462, 523
TaiI	ACGT	2 cut(s)	270, 275
TasI	AATT	7 cut(s)	42, 253, 293, 302, 446, 535, 558
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	263, 557, 562
Tru9I	TTAA	3 cut(s)	263, 557, 562
TscAI	CASTG	2 cut(s)	365, 465
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	413, 536
TspRI	CASTG	2 cut(s)	365, 465
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	3 cut(s)	253, 293, 302
XceI	RCATGY	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	4 cut(s)	132, 186, 192, 200
ZraI	GACGTC	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.