pycom11g00040

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
52401 .. 52871
471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGGCCACAGGGCTTCCATCTCCTCCAATATCCATAACCACTAGCGCACCCACCCTCCCAATCCTTAAACCCTCATTCTCTAGTTCTCCCAATTCTTCTGATTCTTCTTCTTCCCCAAATCTTCGCAAAAAATCTTTCTATTTTCGCTCTCAATCCGAAAAAAAAAAAACCCAGAAATTTCATGGATTTCGAAATTTTATTTCCCAAAATTCCAAACCATCATCTTCTCCGCGTCAACCTACTTGCAAATCTGAAAAGAACCCTCCCAAGTTTCCTCCTATCTTGCTCCGCACTTACTTGAACCAGCACGATACCCACGCCGATCTGAATGTCTGCACCGAACACATAATTAAGCACAGACTCCCGATGGCCACAACTTCTTTTAGATCCGAGTTTCCAATGCCATCTCTTCCTGAATTGGGCATCACGGTGGGATATCTAATCCACACCCACCCCTTCCACCTGATGTAA

Protein Analysis

157

Amino Acids

17.5

Weight (kDa)

10.07

Isoelectric Point (pI)

77.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 230, 289
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 2 cut(s) 3, 369
AcsI RAATTY 3 cut(s) 176, 193, 208
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 301
AlwI GGATC 1 cut(s) 381
AoxI GGCC 2 cut(s) 3, 369
ApoI RAATTY 3 cut(s) 176, 193, 208
AspLEI GCGC 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 190
BalI TGGCCA 2 cut(s) 5, 371
BccI CCATC 4 cut(s) 25, 226, 361, 412
BfaI CTAG 2 cut(s) 42, 81
BmsI GCATC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 5, 371
BslI CCNNNNNNNGG 1 cut(s) 419
BsnI GGCC 2 cut(s) 5, 371
Bsp119I TTCGAA 1 cut(s) 190
Bsp143I GATC 2 cut(s) 322, 386
BspACI CCGC 2 cut(s) 230, 289
BspANI GGCC 2 cut(s) 5, 371
BspFNI CGCG 1 cut(s) 232
BspPI GGATC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 190
BssMI GATC 2 cut(s) 322, 386
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 190
BstFNI CGCG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 325, 389
BstMBI GATC 2 cut(s) 322, 386
BstUI CGCG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 5, 371
CfoI GCGC 1 cut(s) 47
CseI GACGC 1 cut(s) 221
CviAII CATG 1 cut(s) 182
CviJI RGCY 3 cut(s) 5, 13, 371
CviKI_1 RGCY 3 cut(s) 5, 13, 371
DpnI GATC 2 cut(s) 324, 388
DpnII GATC 2 cut(s) 322, 386
EaeI YGGCCR 2 cut(s) 3, 369
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 437
EcoRV GATATC 1 cut(s) 437
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 35, 183, 347
FatI CATG 1 cut(s) 181
FspBI CTAG 2 cut(s) 42, 81
GlaI GCGC 1 cut(s) 46
HaeIII GGCC 2 cut(s) 5, 371
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 236
HindII GTYRAC 1 cut(s) 236
HinfI GANTC 2 cut(s) 101, 360
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 5 cut(s) 100, 157, 253, 327, 391
Hpy188III TCNNGA 2 cut(s) 364, 413
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4V TGCA 2 cut(s) 246, 336
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 322, 386
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 3 cut(s) 185, 317, 426
LweI GCATC 1 cut(s) 432
MaeI CTAG 2 cut(s) 42, 81
MalI GATC 2 cut(s) 324, 388
MboI GATC 2 cut(s) 322, 386
MboII GAAGA 7 cut(s) 87, 96, 99, 102, 113, 216, 401
MflI RGATCY 1 cut(s) 386
MlsI TGGCCA 2 cut(s) 5, 371
MluCI AATT 6 cut(s) 91, 176, 193, 208, 348, 416
MluNI TGGCCA 2 cut(s) 5, 371
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 5 cut(s) 33, 65, 82, 273, 285
Mox20I TGGCCA 2 cut(s) 5, 371
MscI TGGCCA 2 cut(s) 5, 371
MseI TTAA 2 cut(s) 66, 351
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 2 cut(s) 5, 371
MvnI CGCG 1 cut(s) 232
NdeII GATC 2 cut(s) 322, 386
NlaIII CATG 1 cut(s) 185
NspV TTCGAA 1 cut(s) 190
PfeI GAWTC 1 cut(s) 101
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 2 cut(s) 66, 351
Sau3AI GATC 2 cut(s) 322, 386
SchI GAGTC 1 cut(s) 354
SetI ASST 2 cut(s) 241, 465
SfaNI GCATC 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 6 cut(s) 91, 176, 193, 208, 348, 416
SsiI CCGC 2 cut(s) 230, 289
SspMI CTAG 2 cut(s) 42, 81
TaaI ACNGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 190
TasI AATT 6 cut(s) 91, 176, 193, 208, 348, 416
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 66, 351
Tru9I TTAA 2 cut(s) 66, 351
TspDTI ATGAA 1 cut(s) 170
XapI RAATTY 3 cut(s) 176, 193, 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XspI CTAG 2 cut(s) 42, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.