Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

526347 .. 530695

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCATCCCGTTCCCATTGTTTCCGGTCTCTTCGACGAATTCCTCACCGAGACTCCACCACGAAACCAGAGTTATCAGATCAGCAATCCAGTCCAGACTCCTAGTCCTGACTCTAAACTTCCTATGGCGGATTCTCTTGTCTCCTTAATACACCTCCGCCCCCATCAACCCCAATTGCCTATCCACCAACCCCTCACAACAAAAGGTTCTCTTCCTTCTCTGATCTCCGCTATCGAGTCCAGCATTGTGTGGGACAGTGTCTACTTCGTTCGGATTTCAGAGTGTGGCTATGAGTACGAGCAGACCTACGCTTTCTTCCCGCTTCTTCCTCTTTGCATGTCGATGTTATCCCGCACAGGTTTACCACCACGTTGTTTACCCGAGCCAATCATCTTCCTTGTAGCCAAGTCCTACCTGCAGCATTTGCATAAGCATCATTGTTATTACCGGAATCATGGTTGGAATCGATCAAGGACACAGCATGGGCAAGTTGTTGTAGCTGTTCATGAGAAAAGGCCTGCAATGGATTGGATGATGATGAGGACACAACATCGGTTTGCTGTCTCTCAGCAGCATGGGCATAGGAGTCACGTGCCCTGCTGTCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

204

Amino Acids

23.35

Weight (kDa)

8.79

Isoelectric Point (pI)

66.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	77 - 121	2.1e-14	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	5 cut(s)	128, 157, 228, 320, 352
AcsI	RAATTY	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	592
AfaI	GTAC	1 cut(s)	296
AhdI	GACNNNNNGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	500
AluI	AGCT	1 cut(s)	500
Alw26I	GTCTC	4 cut(s)	32, 44, 145, 568
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	418, 571
ApoI	RAATTY	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	597
BbrPI	CACGTG	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	430, 583
BccI	CCATC	1 cut(s)	171
BcoDI	GTCTC	4 cut(s)	32, 44, 145, 568
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	2 cut(s)	419, 572
BlsI	GCNGC	2 cut(s)	420, 573
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	13, 442
Bsa29I	ATCGAT	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	592
BsaI	GGTCTC	1 cut(s)	32
BsaWI	WCCGGW	2 cut(s)	23, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	466
BseGI	GGATG	2 cut(s)	4, 537
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	430, 583
BshFI	GGCC	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	24, 448
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	4 cut(s)	32, 44, 145, 568
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	517
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	3 cut(s)	78, 222, 467
BspACI	CCGC	5 cut(s)	128, 157, 228, 320, 352
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	78, 222, 467
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	35, 216
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	4, 537
BstKTI	GATC	3 cut(s)	81, 225, 470
BstMAI	GTCTC	4 cut(s)	32, 44, 145, 568
BstMBI	GATC	3 cut(s)	78, 222, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 577
BstNSI	RCATGY	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	430, 583
Bsu15I	ATCGAT	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	4, 537
BtsIMutI	CAGTG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	519
CciI	TCATGA	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	337, 455, 482, 506, 575
CviJI	RGCY	5 cut(s)	288, 385, 404, 500, 517
CviKI_1	RGCY	5 cut(s)	288, 385, 404, 500, 517
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	80, 224, 469
DpnII	GATC	3 cut(s)	78, 222, 467
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	35, 216
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	2 cut(s)	35, 216
EciI	GGCGGA	2 cut(s)	143, 146
Eco147I	AGGCCT	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	592
Eco88I	CYCGRG	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	340, 458, 485, 509, 578
FaiI	YATR	9 cut(s)	125, 291, 338, 429, 456, 483, 507, 576, 582
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	5 cut(s)	336, 454, 481, 505, 574
FauI	CCCGC	2 cut(s)	327, 359
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	419, 572
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	2 cut(s)	419, 572
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	419, 572
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	2 cut(s)	24, 448
Hin1II	CATG	5 cut(s)	340, 458, 485, 509, 578
HinfI	GANTC	8 cut(s)	52, 97, 110, 131, 236, 451, 463, 586
HpaII	CCGG	2 cut(s)	24, 448
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	3 cut(s)	262, 362, 377
Hpy188I	TCNGA	4 cut(s)	78, 222, 273, 280
Hpy188III	TCNNGA	3 cut(s)	94, 107, 506
Hpy8I	GTNNAC	3 cut(s)	262, 362, 377
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	370, 591
HpyCH4V	TGCA	5 cut(s)	4, 336, 418, 427, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 577
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	370, 591
Hsp92II	CATG	5 cut(s)	340, 458, 485, 509, 578
Kzo9I	GATC	3 cut(s)	78, 222, 467
Lsp1109I	GCAGC	2 cut(s)	430, 583
LweI	GCATC	2 cut(s)	13, 442
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	370, 591
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	3 cut(s)	80, 224, 469
MboI	GATC	3 cut(s)	78, 222, 467
MboII	GAAGA	5 cut(s)	22, 203, 307, 317, 385
MfeI	CAATTG	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	2 cut(s)	38, 173
MlyI	GAGTC	5 cut(s)	46, 91, 104, 245, 595
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	5 cut(s)	53, 164, 203, 339, 534
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	2 cut(s)	24, 448
MunI	CAATTG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	424, 577
NdeII	GATC	3 cut(s)	78, 222, 467
NlaIII	CATG	5 cut(s)	340, 458, 485, 509, 578
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	340
PagI	TCATGA	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	131, 451, 463
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	420, 573
PleI	GAGTC	5 cut(s)	46, 91, 104, 244, 594
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
PpsI	GAGTC	5 cut(s)	46, 91, 104, 244, 594
Ppu21I	YACGTR	1 cut(s)	592
PspCI	CACGTG	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	420
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	419, 572
Sau3AI	GATC	3 cut(s)	78, 222, 467
SchI	GAGTC	5 cut(s)	46, 91, 104, 245, 595
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	8 cut(s)	156, 208, 308, 361, 373, 417, 502, 594
SfaNI	GCATC	2 cut(s)	13, 442
SfcI	CTRYAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	38, 173
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	5 cut(s)	128, 157, 228, 320, 352
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	517
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	373, 594
TaqI	TCGA	4 cut(s)	33, 234, 341, 466
TasI	AATT	2 cut(s)	38, 173
TfiI	GAWTC	3 cut(s)	131, 451, 463
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	418, 571
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.