Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

532500 .. 533251

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATATTGCATCAGACATTGTTCACCCTTTTTTCTGTTGGAGGATTGTATCATCTAATATCTGGAAAAGATGTTATTGCTGTTCTTTGGCTTGCCCTCTCTGGATTTTCAAGGTCCAATGGAGTGCTTAATGCTGGTTATTTCTGTTTTCAGACTATGCATCAGACCTATGATGCTGTTTTCTTGAGGAAGCTTGGCATTGCAGGCTGTTGTTGGTGGAGCTCTGCGTTGTATATGCATTTTTGTCCCTTTTGTTGCATTTCAAGCATATGGATACAACAATATTTGTCTTGGACATCTTCCATCCAATATGAGACCCTGATGCAAAGCAAGAATACCGTTGCTGTACAATTATATTCAAAGTCATTATTGGTATGCGATCTATTACCACCAAGGCTTGTTCATCAGGCTACCACTTTCTCTTTTCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

8.51

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	5 - 62	2.9e-11	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	111, 264, 360
AluBI	AGCT	2 cut(s)	193, 222
AluI	AGCT	2 cut(s)	193, 222
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmsI	GCATC	4 cut(s)	19, 163, 169, 312
BpuEI	CTTGAG	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	93, 205
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 264
BsuI	GTATCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	93, 205
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	347
CviJI	RGCY	6 cut(s)	91, 193, 207, 222, 397, 410
CviKI_1	RGCY	6 cut(s)	91, 193, 207, 222, 397, 410
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	392
EcoT22I	ATGCAT	2 cut(s)	162, 240
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	392
FaiI	YATR	9 cut(s)	158, 171, 234, 236, 269, 271, 312, 355, 376
FaqI	GGGAC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	269
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	191
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	15, 153, 165
Hpy188III	TCNNGA	3 cut(s)	63, 102, 184
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	10, 160, 203, 238, 258, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 264
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	6 cut(s)	48, 87, 120, 189, 332, 392
LweI	GCATC	4 cut(s)	19, 163, 169, 312
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	291, 419
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	3 cut(s)	35, 107, 180
Mph1103I	ATGCAT	2 cut(s)	162, 240
MseI	TTAA	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	204, 264
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	1 cut(s)	379
NsiI	ATGCAT	2 cut(s)	162, 240
Psp124BI	GAGCTC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	114
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	4 cut(s)	116, 170, 195, 224
SfaNI	GCATC	4 cut(s)	19, 163, 169, 312
SinI	GGWCC	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	350
SspI	AATATT	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	1 cut(s)	350
TatI	WGTACW	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	114
Zsp2I	ATGCAT	2 cut(s)	162, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.