Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

554553 .. 556946

Gene Structure 2394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTAGGCCATCTGATGTCAGCCGGATCATTAACCGTGACAAACTCTGATTCCGAGCGGCAGAATAACAGAACAACGACAAACAAACTCAGAAAGCAACCCGGCAAACCAAAAAAAAACCCATATCACAATTTGCAATACCGAGCCCAAGAAATTAATTTTCTGAAAATTTGGGTAGAAAAAGGGGGCCACCTTCCAAAAGAACCCATGAGGAAGAACTGGTTTTTCTTTTCCAAAGAGATAACTCTCGCGACCTCCAATCTCCTTTTCCAAAGTCTCGACCTCCAAAACCTCTTCAACCAAACCCAATTGCCTCCGACGAATTCCTCACCGAGGCTCCACCACGAAACCACAGTTATTAGAACAGCAGTCCAGTCCAGACTCCTAGTCCTGACTCTAATCCTCCTATGGCGGACTGTCTTGTCTCCCTACGACACATCCACCCCCATCAACCCCAATTGCCTATTCACCAACCCCTCACAAAAAAACGTTCTCTTTCCTTCTCTGTGCTCCGCTATCGAGCCCAGCATTGTGTGGGACAGTGGCTATGAGTACGAGCAGACCTACGCTTTCTTTCCGCTTCTTCCTCTCTGCATGTCGATGTTATCCCGCACAGGCAGTGGTGCCTTGTGGTTTCAGTTTTGGCACCATTGTTCCGGTCATTGGGCAGAGAGCTGTGTTAGGATTATCTGGCTATGTGATCAACATCATTGGCTTCGTGTTTGCGGCTGTTTATCTATACAGTTGGCATTGCAGGCTGTTGTTGGTGGATCTCTGCGTTGTATATGCATTTTTGTCCCTTTTGTTGCATTTCAAGCATATGGATACAACAATATTTGTCTTGGACATCTTCCATCCAATATGAGGCCCTGGTGCAAAGCAAGAGTAGCATTGCTCTGCAATTATATTCAAAGTCATTATTGGTATGTGATCTTTTACCACCAAGGCTTGTTCATCAGGCTACCACTTTCTCTTTTCTTCTTTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0019637 GO:0031501 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Mannosyl_trans2

Protein Analysis

330

Amino Acids

38.08

Weight (kDa)

9.32

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mannosyl_trans2	PF04188	119 - 206	1.6e-12	Mannosyltransferase (PIG-V)
Mannosyl_trans2	PF04188	236 - 313	1.4e-17	Mannosyltransferase (PIG-V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB1I	GGYRCC	2 cut(s)	623, 645
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	251
AciI	CCGC	6 cut(s)	58, 412, 513, 578, 610, 726
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	2 cut(s)	34, 778
AcsI	RAATTY	2 cut(s)	168, 322
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	3 cut(s)	333, 663, 864
AgsI	TTSAA	3 cut(s)	298, 815, 911
AhdI	GACNNNNNGTC	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	4 cut(s)	251, 283, 449, 481
AluBI	AGCT	1 cut(s)	675
AluI	AGCT	1 cut(s)	675
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	281, 429
AlwI	GGATC	2 cut(s)	34, 778
AoxI	GGCC	3 cut(s)	7, 187, 866
ApoI	RAATTY	2 cut(s)	168, 322
AseI	ATTAAT	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	187, 867
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	321, 460
BanI	GGYRCC	2 cut(s)	623, 645
BanII	GRGCYC	2 cut(s)	148, 525
Bbv12I	GWGCWC	1 cut(s)	512
BccI	CCATC	3 cut(s)	18, 455, 862
BciT130I	CCWGG	1 cut(s)	871
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	281, 429
BfaI	CTAG	2 cut(s)	5, 386
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	2 cut(s)	59, 727
BlsI	GCNGC	2 cut(s)	60, 728
Bme1390I	CCNGG	2 cut(s)	102, 871
BmeRI	GACNNNNNGTC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	187, 867
BmiI	GGNNCC	4 cut(s)	188, 338, 625, 647
BmrFI	CCNGG	2 cut(s)	102, 871
BpuMI	CCSGG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	705
BsaJI	CCNNGG	3 cut(s)	332, 869, 943
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	333, 663, 864
Bse1I	ACTGG	2 cut(s)	224, 373
Bse3DI	GCAATG	2 cut(s)	749, 890
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	871
BseDI	CCNNGG	3 cut(s)	332, 869, 943
BseGI	GGATG	2 cut(s)	437, 854
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	333, 663, 864
BseMI	GCAATG	2 cut(s)	749, 890
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	2 cut(s)	224, 373
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	9, 189, 868
BshNI	GGYRCC	2 cut(s)	623, 645
BsiHKAI	GWGCWC	1 cut(s)	512
BsiSI	CCGG	3 cut(s)	24, 102, 657
BslFI	GGGAC	2 cut(s)	551, 782
BslI	CCNNNNNNNGG	3 cut(s)	333, 663, 864
BsmAI	GTCTC	2 cut(s)	281, 429
BsmFI	GGGAC	2 cut(s)	551, 782
BsnI	GGCC	3 cut(s)	9, 189, 868
Bsp1286I	GDGCHC	3 cut(s)	148, 512, 525
Bsp143I	GATC	4 cut(s)	26, 700, 770, 930
Bsp68I	TCGCGA	1 cut(s)	251
BspACI	CCGC	6 cut(s)	58, 412, 513, 578, 610, 726
BspANI	GGCC	3 cut(s)	9, 189, 868
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	4 cut(s)	188, 338, 625, 647
BspPI	GGATC	2 cut(s)	34, 778
BspT107I	GGYRCC	2 cut(s)	623, 645
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	749, 890
BsrI	ACTGG	2 cut(s)	224, 373
BssECI	CCNNGG	3 cut(s)	332, 869, 943
BssMI	GATC	4 cut(s)	26, 700, 770, 930
BssT1I	CCWWGG	1 cut(s)	943
Bst2UI	CCWGG	1 cut(s)	871
Bst4CI	ACNGT	5 cut(s)	37, 355, 418, 542, 744
Bst6I	CTCTTC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	1 cut(s)	89
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	437, 854
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	4 cut(s)	29, 703, 773, 933
BstMAI	GTCTC	2 cut(s)	281, 429
BstMBI	GATC	4 cut(s)	26, 700, 770, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	755, 815, 887
BstNI	CCWGG	1 cut(s)	871
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	100, 869
BstUI	CGCG	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	9, 189, 868
BtsCI	GGATG	2 cut(s)	437, 854
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	547, 625
BtuMI	TCGCGA	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	756
Cfr13I	GGNCC	2 cut(s)	187, 867
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	2 cut(s)	208, 595
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	28, 702, 772, 932
DpnII	GATC	4 cut(s)	26, 700, 770, 930
DrdI	GACNNNNNNGTC	1 cut(s)	421
DriI	GACNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	943
Eco24I	GRGCYC	2 cut(s)	148, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	867
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	943
EcoT22I	ATGCAT	1 cut(s)	791
EcoT38I	GRGCYC	2 cut(s)	148, 525
ErhI	CCWWGG	1 cut(s)	943
FaeI	CATG	2 cut(s)	211, 598
FaqI	GGGAC	2 cut(s)	551, 782
FatI	CATG	2 cut(s)	207, 594
FauI	CCCGC	1 cut(s)	617
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	59, 727
FokI	GGATG	2 cut(s)	424, 841
FriOI	GRGCYC	2 cut(s)	148, 525
Fsp4HI	GCNGC	2 cut(s)	59, 727
FspBI	CTAG	2 cut(s)	5, 386
GluI	GCNGC	2 cut(s)	59, 727
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	3 cut(s)	9, 189, 868
HapII	CCGG	3 cut(s)	24, 102, 657
Hin1II	CATG	2 cut(s)	211, 598
HinfI	GANTC	3 cut(s)	50, 381, 394
HpaII	CCGG	3 cut(s)	24, 102, 657
HphI	GGTGA	2 cut(s)	321, 460
Hpy188I	TCNGA	6 cut(s)	15, 49, 55, 92, 165, 318
Hpy188III	TCNNGA	4 cut(s)	250, 278, 378, 391
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	203, 510
HpyCH4III	ACNGT	5 cut(s)	37, 355, 418, 542, 744
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	7 cut(s)	136, 594, 754, 789, 809, 876, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	755, 815, 887
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	211, 598
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	26, 700, 770, 930
LmnI	GCTCC	2 cut(s)	342, 515
MaeI	CTAG	2 cut(s)	5, 386
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	4 cut(s)	28, 702, 772, 932
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	4 cut(s)	26, 700, 770, 930
MboII	GAAGA	5 cut(s)	226, 286, 575, 842, 970
MfeI	CAATTG	2 cut(s)	308, 457
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	3 cut(s)	148, 512, 525
MluCI	AATT	8 cut(s)	130, 153, 157, 168, 308, 322, 457, 901
MlyI	GAGTC	2 cut(s)	375, 388
MmeI	TCCRAC	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	791
MseI	TTAA	2 cut(s)	32, 156
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	3 cut(s)	24, 102, 657
MspR9I	CCNGG	2 cut(s)	102, 871
MunI	CAATTG	2 cut(s)	308, 457
MvaI	CCWGG	1 cut(s)	871
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	755, 815, 887
NciI	CCSGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	4 cut(s)	26, 700, 770, 930
NlaIII	CATG	2 cut(s)	211, 598
NlaIV	GGNNCC	4 cut(s)	188, 338, 625, 647
NmuCI	GTSAC	1 cut(s)	37
NruI	TCGCGA	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	60, 728
PleI	GAGTC	2 cut(s)	375, 388
PpsI	GAGTC	2 cut(s)	375, 388
PshBI	ATTAAT	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	869
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	869
PspN4I	GGNNCC	4 cut(s)	188, 338, 625, 647
PspPI	GGNCC	2 cut(s)	187, 867
PsuI	RGATCY	1 cut(s)	770
RruI	TCGCGA	1 cut(s)	251
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	32, 156
SatI	GCNGC	2 cut(s)	59, 727
Sau3AI	GATC	4 cut(s)	26, 700, 770, 930
Sau96I	GGNCC	2 cut(s)	187, 867
SchI	GAGTC	2 cut(s)	375, 388
ScrFI	CCNGG	2 cut(s)	102, 871
SduI	GDGCHC	3 cut(s)	148, 512, 525
SetI	ASST	7 cut(s)	195, 257, 285, 294, 492, 566, 677
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	8 cut(s)	130, 153, 157, 168, 308, 322, 457, 901
SsiI	CCGC	6 cut(s)	58, 412, 513, 578, 610, 726
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	2 cut(s)	5, 386
StyD4I	CCNGG	2 cut(s)	100, 869
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	5 cut(s)	37, 355, 418, 542, 744
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	3 cut(s)	279, 519, 599
TasI	AATT	8 cut(s)	130, 153, 157, 168, 308, 322, 457, 901
TauI	GCSGC	2 cut(s)	61, 729
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	32, 156
Tru9I	TTAA	2 cut(s)	32, 156
TscAI	CASTG	2 cut(s)	547, 625
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	943
TspRI	CASTG	2 cut(s)	547, 625
VspI	ATTAAT	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	168, 322
XceI	RCATGY	1 cut(s)	598
XspI	CTAG	2 cut(s)	5, 386
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.