pycom11g00850

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
625359 .. 625610
252 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGCAAACCAATAAGGTGAGAGATGAAGAGGAGGTAGCAACGAGTGTGGAAAAAGCTGCTTCTCTGCCGAGGAAGCCAGTGACTCAGGAGGTAGTTGCGGCTGACGAAGACGGAGAGGACTCGAGGTTTATCCGCAAACCGATGGAAGATGAGGAGGCTCGTAAGCAATACCCCAAGAGAAATGTGGGAGAGGTGAGAGATTTTGTTTCAAAAAAAAAAAAAATATATATATATATATATATATATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.75

Weight (kDa)

6.33

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 98, 133
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 28, 205
AvaI CYCGRG 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 136
BisI GCNGC 2 cut(s) 57, 99
BlsI GCNGC 2 cut(s) 58, 100
BmeT110I CYCGRG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 44, 167
BseXI GCAGC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 121
BspACI CCGC 2 cut(s) 98, 133
BspCNI CTCAG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviJI RGCY 4 cut(s) 56, 76, 101, 158
CviKI_1 RGCY 4 cut(s) 56, 76, 101, 158
DdeI CTNAG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 57, 99
Fsp4HI GCNGC 2 cut(s) 57, 99
GluI GCNGC 2 cut(s) 57, 99
HinfI GANTC 2 cut(s) 82, 119
HphI GGTGA 2 cut(s) 28, 205
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 84
LpnPI CCDG 2 cut(s) 71, 90
Lsp1109I GCAGC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 3 cut(s) 38, 119, 158
MlyI GAGTC 2 cut(s) 76, 113
MnlI CCTC 9 cut(s) 22, 25, 63, 82, 109, 117, 145, 148, 184
MseI TTAA 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 73
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 121
PkrI GCNGC 2 cut(s) 58, 100
PleI GAGTC 2 cut(s) 76, 113
PpsI GAGTC 2 cut(s) 76, 113
PspXI VCTCGAGB 1 cut(s) 121
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 2 cut(s) 57, 99
SchI GAGTC 2 cut(s) 76, 113
SetI ASST 6 cut(s) 18, 36, 58, 93, 128, 195
Sfr274I CTCGAG 1 cut(s) 121
SgeI CNNG 8 cut(s) 54, 81, 89, 98, 133, 135, 171, 187
SlaI CTCGAG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SsiI CCGC 2 cut(s) 98, 133
TaqI TCGA 1 cut(s) 122
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.