pycom11g00920

DNA (cytosine-5)-methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
692488 .. 693484
997 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGGAAGAGAATCCTCTTATGATTCACTTTGTGGGTCCTTACGCTCCAAAACCAAACGTCGCCTCAAAGTTCAAATCCCACTTTTCAAAATTTCCCGTTTTCCCGCCCACACGCCGCGCACTCCCCACTCCATTAATTTCGCGGCCCACTATAAAACAGAACCCCAATCCAATCACTCGCGCACTGAAAACACCCTATCGCCCATTTCTCTCTCTAAAAGATCCACCGTCTTCTCCGGCGATTCAGCCTCTCTCCGCCGTAAGCAGAATGGCGTGCAAGCGGATGTCGAAGGCCGGAACCTCTTCAGGTTCTCCGCCGAAGTCGAAGAACCCAATGCAAACCAAGAAGGCGAGAGTTGAGGAGGAGGTAGCAATGAGTGTGGAAAAAGCTACTTCTCCGCCAAAATCGAAGAAGACGAGGCAAACCAAGAAGGCGAGAGATGAAGAGGAGGTAGCAACAAGTGTGGAAGAAGTGTCCTCTCCACTGAAATTGAAGAACGCGAGGCAAACCGGGAACGCGATGGTTGAGGAGGAGGTAGCAACAATTGTGGAAACATCTGCTTCTCCGCTGCAATTGAAGAATCGGAGACAAACCAAGAAGGCGAGAGTTGATGAGGAGGTAGCAACGAGTGTGGAAAGAACTGCTTTTTGCCCACATCGAAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

223

Amino Acids

24.61

Weight (kDa)

10.26

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 117, 142, 180, 500, 518
AciI CCGC 8 cut(s) 104, 115, 142, 255, 280, 314, 398, 566
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 31
AgsI TTSAA 4 cut(s) 73, 87, 493, 577
AluBI AGCT 2 cut(s) 389, 666
AluI AGCT 2 cut(s) 389, 666
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 143, 291
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 1 cut(s) 89
AseI ATTAAT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 2 cut(s) 119, 182
AspS9I GGNCC 2 cut(s) 35, 144
AsuC2I CCSGG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 35
BbsI GAAGAC 2 cut(s) 222, 419
BbvI GCAGC 1 cut(s) 555
BccI CCATC 1 cut(s) 514
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 580
BisI GCNGC 3 cut(s) 115, 143, 569
BlsI GCNGC 3 cut(s) 116, 144, 570
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 144
BmiI GGNNCC 2 cut(s) 36, 298
BmrFI CCNGG 1 cut(s) 511
BpiI GAAGAC 2 cut(s) 222, 419
BpuMI CCSGG 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 378
BseGI GGATG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 378
BseRI GAGGAG 6 cut(s) 374, 377, 461, 542, 545, 629
BseXI GCAGC 1 cut(s) 555
Bsh1236I CGCG 5 cut(s) 117, 142, 180, 500, 518
BshFI GGCC 2 cut(s) 145, 293
BsiSI CCGG 3 cut(s) 236, 294, 510
BsmAI GTCTC 1 cut(s) 580
BsnI GGCC 2 cut(s) 145, 293
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 8 cut(s) 104, 115, 142, 255, 280, 314, 398, 566
BspANI GGCC 2 cut(s) 145, 293
BspFNI CGCG 5 cut(s) 117, 142, 180, 500, 518
BspLI GGNNCC 2 cut(s) 36, 298
BspPI GGATC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 378
BssMI GATC 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 307, 438
BstC8I GCNNGC 2 cut(s) 274, 278
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 5 cut(s) 117, 142, 180, 500, 518
BstHHI GCGC 2 cut(s) 119, 182
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 509
BstUI CGCG 5 cut(s) 117, 142, 180, 500, 518
BstV1I GCAGC 1 cut(s) 555
BstV2I GAAGAC 2 cut(s) 222, 419
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 2 cut(s) 145, 293
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 182, 482
Cac8I GCNNGC 2 cut(s) 274, 278
CfoI GCGC 2 cut(s) 119, 182
Cfr13I GGNCC 2 cut(s) 35, 144
CviJI RGCY 5 cut(s) 145, 247, 293, 389, 666
CviKI_1 RGCY 5 cut(s) 145, 247, 293, 389, 666
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 307, 438
EarI CTCTTC 2 cut(s) 307, 438
EciI GGCGGA 3 cut(s) 244, 303, 387
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 35
FaiI YATR 2 cut(s) 20, 152
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 115, 143, 569
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 115, 143, 569
GlaI GCGC 2 cut(s) 118, 181
GluI GCNGC 3 cut(s) 115, 143, 569
HaeIII GGCC 2 cut(s) 145, 293
HapII CCGG 3 cut(s) 236, 294, 510
HhaI GCGC 2 cut(s) 119, 182
Hin6I GCGC 2 cut(s) 117, 180
HinP1I GCGC 2 cut(s) 117, 180
HinfI GANTC 4 cut(s) 10, 22, 241, 580
HpaII CCGG 3 cut(s) 236, 294, 510
Hpy188I TCNGA 1 cut(s) 585
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 283, 340, 424, 592
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 276, 337, 571
HpySE526I ACGT 1 cut(s) 57
HspAI GCGC 2 cut(s) 117, 180
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 249, 291, 307, 523
Lsp1109I GCAGC 1 cut(s) 555
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MfeI CAATTG 2 cut(s) 543, 572
MflI RGATCY 1 cut(s) 220
MluCI AATT 5 cut(s) 89, 135, 488, 543, 572
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 3 cut(s) 236, 294, 510
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 2 cut(s) 543, 572
MvnI CGCG 5 cut(s) 117, 142, 180, 500, 518
NciI CCSGG 1 cut(s) 511
NdeII GATC 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 36, 298
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 10, 22, 241, 580
PkrI GCNGC 3 cut(s) 116, 144, 570
PpuMI RGGWCCY 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 36, 298
PspPI GGNCC 2 cut(s) 35, 144
PspPPI RGGWCCY 1 cut(s) 35
PsuI RGATCY 1 cut(s) 220
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 3 cut(s) 115, 143, 569
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 35, 144
ScrFI CCNGG 1 cut(s) 511
SetI ASST 9 cut(s) 60, 302, 310, 369, 391, 453, 537, 621, 668
SinI GGWCC 1 cut(s) 35
Sse9I AATT 5 cut(s) 89, 135, 488, 543, 572
SsiI CCGC 8 cut(s) 104, 115, 142, 255, 280, 314, 398, 566
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 287, 323, 407, 658
TasI AATT 5 cut(s) 89, 135, 488, 543, 572
TauI GCSGC 2 cut(s) 117, 145
TfiI GAWTC 4 cut(s) 10, 22, 241, 580
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 2 cut(s) 189, 489
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 2 cut(s) 189, 489
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 134
XapI RAATTY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.