pycom11g01180

metal ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
957267 .. 957862
596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 414 bp
ATGGGCATGTGGGGACTGAAGATATTGAAGGTTTTGAGCTTCATGATTTGCATGGGTTGCTGCAGGAATTCGGTCTCGATCTGCAGGTTGGGATCTGTAACTATCGCTGCTGCGGAGAGGTGGGGTGTCGCAGGTCAGGACACGAGTTGCAAGCCGGTCGTGAAGAGGACCAACGTTCATCAAAATTCAGGCCTTGCTGAAGCCCAGGACTTCGTGGTGGCTGCTGTTGCAGATCTGCAAATATCGAAGAAGACGACATTTTTGGAGGGGAAGAGCGAAGAGAGAGACATCTTCAAGGTGTGGGTTGCTGAGTTAACCCCCAATCAGGTGGCCGGAGAAGAAGAGGACTTCGCCAGAGTTGTGAAGGTGAGGGTGGTGTCTGGTGGCGTGGGAGAAGGAATTGCACGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009889 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010468 GO:0010556 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0031440 GO:0031935 GO:0031937 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043954 GO:0044030 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0061085 GO:0061087 GO:0061458 GO:0065007 GO:0070827 GO:0070828 GO:0070829 GO:0071840 GO:0080090 GO:0090436 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1900109 GO:1900111 GO:1900363 GO:1901363 GO:1902275 GO:1903311 GO:1903506 GO:1905269 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNMT1-RFD

Protein Analysis

138

Amino Acids

14.87

Weight (kDa)

8.32

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 75, 122
AciI CCGC 1 cut(s) 113
AclI AACGTT 1 cut(s) 174
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 67, 184
AcuI CTGAAG 2 cut(s) 38, 219
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 2 cut(s) 28, 295
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 409
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 79, 279
AlwI GGATC 1 cut(s) 100
AoxI GGCC 2 cut(s) 190, 330
ApeKI GCWGC 4 cut(s) 60, 107, 110, 221
ApoI RAATTY 2 cut(s) 67, 184
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 1 cut(s) 168
BauI CACGAG 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 4 cut(s) 47, 94, 97, 208
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 79, 279
BfmI CTRYAG 2 cut(s) 61, 82
BfuAI ACCTGC 2 cut(s) 75, 122
BglII AGATCT 1 cut(s) 232
BisI GCNGC 4 cut(s) 61, 108, 111, 222
BlsI GCNGC 4 cut(s) 62, 109, 112, 223
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 154
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 4 cut(s) 47, 94, 97, 208
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 192, 332
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 155, 333
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 79, 279
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 2 cut(s) 192, 332
Bso31I GGTCTC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 78, 92, 232
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 192, 332
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 42
BspMAI CTGCAG 2 cut(s) 65, 86
BspMI ACCTGC 2 cut(s) 75, 122
BspPI GGATC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 78, 92, 232
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 4 cut(s) 158, 266, 273, 336
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 3 cut(s) 81, 95, 235
BstMAI GTCTC 2 cut(s) 79, 279
BstMBI GATC 3 cut(s) 78, 92, 232
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 57, 227
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 61, 82
BstV1I GCAGC 4 cut(s) 47, 94, 97, 208
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 92, 232
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 2 cut(s) 92, 232
BsuRI GGCC 2 cut(s) 192, 332
BveI ACCTGC 2 cut(s) 75, 122
Cac8I GCNNGC 1 cut(s) 152
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 168
CviAII CATG 3 cut(s) 7, 43, 52
CviJI RGCY 6 cut(s) 39, 154, 192, 203, 221, 332
CviKI_1 RGCY 6 cut(s) 39, 154, 192, 203, 221, 332
DdeI CTNAG 1 cut(s) 309
DpnI GATC 3 cut(s) 80, 94, 234
DpnII GATC 3 cut(s) 78, 92, 232
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 4 cut(s) 158, 266, 273, 336
EarI CTCTTC 4 cut(s) 158, 266, 273, 336
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 38, 219
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 10, 46, 55
FaiI YATR 3 cut(s) 8, 44, 53
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 6, 42, 51
Fnu4HI GCNGC 4 cut(s) 61, 108, 111, 222
Fsp4HI GCNGC 4 cut(s) 61, 108, 111, 222
GluI GCNGC 4 cut(s) 61, 108, 111, 222
HaeIII GGCC 2 cut(s) 192, 332
HapII CCGG 2 cut(s) 155, 333
Hin1II CATG 3 cut(s) 10, 46, 55
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HpaI GTTAAC 1 cut(s) 315
HpaII CCGG 2 cut(s) 155, 333
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 315
Hpy188III TCNNGA 4 cut(s) 43, 76, 137, 160
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 22, 358, 389
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 7 cut(s) 51, 63, 84, 150, 230, 238, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 227
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 3 cut(s) 10, 46, 55
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 78, 92, 232
LguI GCTCTTC 1 cut(s) 266
Lsp1109I GCAGC 4 cut(s) 47, 94, 97, 208
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 80, 94, 234
MboI GATC 3 cut(s) 78, 92, 232
MboII GAAGA 9 cut(s) 31, 175, 259, 262, 283, 283, 290, 350, 353
MflI RGATCY 2 cut(s) 92, 232
MluCI AATT 3 cut(s) 67, 184, 399
MnlI CCTC 5 cut(s) 111, 159, 259, 337, 363
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 409
MspI CCGG 2 cut(s) 155, 333
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 57, 227
NdeII GATC 3 cut(s) 78, 92, 232
NlaIII CATG 3 cut(s) 10, 46, 55
NspI RCATGY 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 409
PagI TCATGA 1 cut(s) 42
PceI AGGCCT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PkrI GCNGC 4 cut(s) 62, 109, 112, 223
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 168
PstI CTGCAG 2 cut(s) 65, 86
PsuI RGATCY 2 cut(s) 92, 232
RseI CAYNNNNRTG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 4 cut(s) 61, 108, 111, 222
Sau3AI GATC 3 cut(s) 78, 92, 232
Sau96I GGNCC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 206
SetI ASST 9 cut(s) 33, 41, 89, 122, 136, 177, 300, 330, 369
SfcI CTRYAG 2 cut(s) 61, 82
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 3 cut(s) 67, 184, 399
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 1 cut(s) 113
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 77, 245
TaqII GACCGA 1 cut(s) 61
TasI AATT 3 cut(s) 67, 184, 399
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseI GCWGC 4 cut(s) 60, 107, 110, 221
TspDTI ATGAA 2 cut(s) 31, 167
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 2 cut(s) 67, 184
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.