Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1441534 .. 1442639

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTTCTTATCGACTTATATCATGCTTTAACTGTAAAGTTCGTGACTTGGAATGATTGCTCTTTGTCCCGAGTGACTTCACCCTTCTCTTGTGTTTTTCTGATCTATGAATTTGTAACATTCGGAACATGTTATGCTGAGTTAATTCCGTGCGATGATAAAACTAAGATGCATAATTGGTTATACAGTGGTTTGCAGGAAATGAGGGTTTCGCGAAATCTTGAGGTCTTGAAAATGGGCATTATCGGCTATCTGGAAGCACTTAAGCTGCAGGAAAAGCTGGTAGCTGATAGAAAAAATACCCTTGGCAAACAACGAACTGATCACAATCTGTTGAGTCCGGAGACTGAACTCAAAAGAATAGGAGCTGAACTGCACTACACACAAAGAGGAGGAGACATTACATTTCATGGTCCACATCAAGCCATCTTGTATCCCATTATTGCTCTTCGTGATATGGGGCTTGGTGCTCGTAAATATGTGGAGAAACTTGAGTCGACTATGATTGACTTGGTGTCTCTGTATGGTGTGAAAGCTTGCCCTGGAAATAAATGTGAAACAGGGGTTTGGGTTGGAGAGAGAAAAATCGGAGCCATTGGTGTACGGATTTCATATGGAGTCACCTCTCATGGGTTGGCATTCAACATTGATCCAGATTTGAGCTACTTTAAGCATATTGTGCCTTGTGGAATTGCAAATAAAGACGTTACATCATTGAGAAGGGAGACGGGCTTGGCGCTTCCTTCGGAAGAAGTAGTTCAGGACCAGTTGATTTCTTGTTTTGCAAGACAATTTGGTTATAGTGATCTTGTGTGGAAGGATGCTGCTTCAGTATCGTCAGACAATGGGGAAACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0016740 GO:0016746 GO:0016747 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0033819 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

287

Amino Acids

32.07

Weight (kDa)

6.26

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LplA-B_cat	PF21948	101 - 254	1.1e-31	Lipoyl protein ligase A/B catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	214
AccIII	TCCGGA	1 cut(s)	340
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	1 cut(s)	630
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	232, 643
AhdI	GACNNNNNGTC	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	6 cut(s)	268, 280, 287, 368, 536, 663
AluI	AGCT	6 cut(s)	268, 280, 287, 368, 536, 663
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	4 cut(s)	338, 390, 522, 719
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	69
Aor13HI	TCCGGA	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	268, 824
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	2 cut(s)	413, 763
AsuHPI	GGTGA	2 cut(s)	72, 613
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	413, 763
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	255, 811
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	543
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	4 cut(s)	338, 390, 522, 719
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	740
BfrI	CTTAAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	269, 825
BlsI	GCNGC	2 cut(s)	270, 826
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	413, 763
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	413, 763
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	159, 811
BpuEI	CTTGAG	2 cut(s)	242, 512
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	304, 541
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	1 cut(s)	766
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	304, 541
BseGI	GGATG	1 cut(s)	826
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	2 cut(s)	405, 408
BseXI	GCAGC	2 cut(s)	255, 811
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	4 cut(s)	338, 390, 522, 719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	638
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	102, 322, 649, 805
Bsp68I	TCGCGA	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	130
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	1 cut(s)	644
BspQI	GCTCTTC	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	2 cut(s)	304, 541
BssMI	GATC	4 cut(s)	102, 322, 649, 805
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	34, 188
Bst6I	CTCTTC	1 cut(s)	453
BstAFI	CTTAAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	2 cut(s)	138, 165
BstF5I	GGATG	1 cut(s)	826
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	4 cut(s)	105, 325, 652, 808
BstMAI	GTCTC	4 cut(s)	338, 390, 522, 719
BstMBI	GATC	4 cut(s)	102, 322, 649, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 277, 679
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	255, 811
BsuI	GTATCC	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	193
BtuMI	TCGCGA	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	538
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	413, 763
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	4 cut(s)	23, 129, 410, 629
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	2 cut(s)	138, 165
DpnI	GATC	4 cut(s)	104, 324, 651, 807
DpnII	GATC	4 cut(s)	102, 322, 649, 805
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	413, 763
Eco57I	CTGAAG	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	4 cut(s)	26, 132, 413, 632
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	4 cut(s)	22, 128, 409, 628
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	2 cut(s)	269, 825
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	2 cut(s)	269, 825
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	2 cut(s)	269, 825
HaeII	RGCGCY	1 cut(s)	740
HapII	CCGG	1 cut(s)	341
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	26, 132, 413, 632
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	337, 494, 618
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	72, 613
Hpy166II	GTNNAC	3 cut(s)	416, 498, 602
Hpy188I	TCNGA	5 cut(s)	102, 125, 590, 748, 841
Hpy8I	GTNNAC	3 cut(s)	416, 498, 602
HpyAV	CCTTC	4 cut(s)	94, 714, 753, 811
HpyCH4III	ACNGT	2 cut(s)	34, 188
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	6 cut(s)	172, 196, 271, 376, 695, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 277, 679
HpyF3I	CTNAG	2 cut(s)	138, 165
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	26, 132, 413, 632
HspAI	GCGC	1 cut(s)	737
Kpn2I	TCCGGA	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	102, 322, 649, 805
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	365, 590
Lsp1109I	GCAGC	2 cut(s)	255, 811
LweI	GCATC	2 cut(s)	159, 811
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	5 cut(s)	43, 73, 115, 619, 706
MalI	GATC	4 cut(s)	104, 324, 651, 807
MboI	GATC	4 cut(s)	102, 322, 649, 805
MboII	GAAGA	2 cut(s)	440, 761
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	5 cut(s)	110, 144, 175, 690, 791
MlyI	GAGTC	3 cut(s)	346, 503, 627
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	198, 217, 383, 386, 634
Mph1103I	ATGCAT	1 cut(s)	174
MroI	TCCGGA	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	4 cut(s)	29, 143, 264, 669
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	246, 277, 679
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	102, 322, 649, 805
NlaIII	CATG	4 cut(s)	26, 132, 413, 632
NlaIV	GGNNCC	1 cut(s)	592
NmuCI	GTSAC	3 cut(s)	43, 73, 619
NruI	TCGCGA	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	174
NspI	RCATGY	1 cut(s)	132
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	756
PkrI	GCNGC	2 cut(s)	270, 826
PleI	GAGTC	3 cut(s)	345, 502, 626
PpsI	GAGTC	3 cut(s)	345, 502, 626
PscI	ACATGT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	2 cut(s)	413, 763
PstI	CTGCAG	1 cut(s)	273
RruI	TCGCGA	1 cut(s)	214
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
SalI	GTCGAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	29, 143, 264, 669
SatI	GCNGC	2 cut(s)	269, 825
Sau3AI	GATC	4 cut(s)	102, 322, 649, 805
Sau96I	GGNCC	2 cut(s)	413, 763
SchI	GAGTC	3 cut(s)	346, 503, 627
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	9 cut(s)	228, 270, 282, 289, 370, 538, 626, 665, 708
SfaNI	GCATC	2 cut(s)	159, 811
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	413, 763
SmlI	CTYRAG	3 cut(s)	221, 263, 491
SmoI	CTYRAG	3 cut(s)	221, 263, 491
Sse9I	AATT	5 cut(s)	110, 144, 175, 690, 791
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	34, 188
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	12, 497
TasI	AATT	5 cut(s)	110, 144, 175, 690, 791
Tru1I	TTAA	4 cut(s)	29, 143, 264, 669
Tru9I	TTAA	4 cut(s)	29, 143, 264, 669
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	3 cut(s)	43, 73, 619
TseI	GCWGC	2 cut(s)	268, 824
Tsp45I	GTSAC	3 cut(s)	43, 73, 619
TspDTI	ATGAA	3 cut(s)	123, 398, 600
TspGWI	ACGGA	2 cut(s)	138, 619
TspRI	CASTG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	413, 763
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	756
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.