pycom11g01780

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
1523463 .. 1524851
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
ATGCAAAAACTGGCAGTTTTGTACATTTCATTTGGTTCTCAAAACACAGTTTCAAAGTCTCAGATGATGCAATTGGCAGTGGCATTGGAGTCAAGTGGTAAAAACTTCATTTGGGTTGTTAGGCAACCATTGCAATATGATGTTGATTCAGAGTTCAAGGAGAACGAGTGGTTTCCGGAAGGGTTCGTGCAGAGGATTAAAGTGGAAATACTGTCTCACAAAGCAACCTCTGCTTTTTTGAGCCATTGTGGATGGAACTCGGTGAGTCCCTTGTTCATGGGGTGCTTTTACTTGGGTGGCCTTTGGCTTCAGAACAGTTTTTTCAACGTCAAGTATCTGGTGGAGCAGGTCGGAGTTTGCGTCGAAGTAGCGAGGGGGAAGAGTTGTGAGGTTCATAAGGAAAATATATTGGCGAAGTTGGAGTTGGTGATGAACGAGACAGAGCAAGGTAAGCAAATGGGAAGGAAAGCTAGCGAGGCAAAGGAGATTATTAGGGATGCCATGAAGGATGAGGAGGGATACAAAGGGTGTTCTACTATGGCTTTGGAAGACTTTCTAACAGCTGCTGCAATGTCATACAGGAGAGACTTGGCGTTAGAGATCGCACATAGTGCCACCACTTTGGTGGAATATAAATCATATCACCTTCCTCTAAAATGCAGTCATGAAATTCCAAGTCACGCATCTTTGGGAACTTGTTCTCGTCTATGTTGCCTAGATCAACCTTCAAACCAAAGTCTTTTCAATCAGTATATATATTTGAGCTTCAGAACAGGGAATCCGATTCCATCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

266

Amino Acids

29.9

Weight (kDa)

6.39

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 6 - 89 8.7e-06 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 175
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 2 cut(s) 293, 751
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 5 cut(s) 54, 157, 325, 729, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AleI CACNNNNGTG 1 cut(s) 623
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
AluBI AGCT 3 cut(s) 470, 563, 765
AluI AGCT 3 cut(s) 470, 563, 765
Alw26I GTCTC 4 cut(s) 63, 219, 431, 579
AlwNI CAGNNNCTG 1 cut(s) 566
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 563, 566
ApoI RAATTY 1 cut(s) 669
Asp700I GAANNNNTTC 2 cut(s) 552, 697
AsuHPI GGTGA 3 cut(s) 274, 439, 635
AsuNHI GCTAGC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 550, 553
BccI CCATC 2 cut(s) 246, 796
BciVI GTATCC 1 cut(s) 512
BcoDI GTCTC 4 cut(s) 63, 219, 431, 579
BfaI CTAG 2 cut(s) 471, 716
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 2 cut(s) 564, 567
BlsI GCNGC 2 cut(s) 565, 568
BmsI GCATC 3 cut(s) 57, 487, 692
BmtI GCTAGC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 555
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 345, 375
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 128, 576
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 3 cut(s) 257, 502, 514
BseMI GCAATG 2 cut(s) 128, 576
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 550, 553
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 1 cut(s) 300
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 252
BsmAI GTCTC 4 cut(s) 63, 219, 431, 579
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 2 cut(s) 600, 718
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 175
BspHI TCATGA 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 337
BspOI GCTAGC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 128, 576
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 15
BssMI GATC 2 cut(s) 600, 718
Bst4CI ACNGT 3 cut(s) 49, 213, 317
Bst6I CTCTTC 1 cut(s) 374
BstAPI GCANNNNNTGC 3 cut(s) 130, 230, 611
BstAUI TGTACA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 257, 502, 514
BstKTI GATC 2 cut(s) 603, 721
BstMAI GTCTC 4 cut(s) 63, 219, 431, 579
BstMBI GATC 2 cut(s) 600, 718
BstMWI GCNNNNNNNGC 5 cut(s) 130, 230, 451, 476, 611
BstV1I GCAGC 2 cut(s) 550, 553
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 2 cut(s) 622, 625
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 3 cut(s) 257, 502, 514
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 472
CaiI CAGNNNCTG 1 cut(s) 566
CciI TCATGA 1 cut(s) 664
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 277, 502, 665
CviJI RGCY 7 cut(s) 243, 300, 307, 470, 542, 563, 765
CviKI_1 RGCY 7 cut(s) 243, 300, 307, 470, 542, 563, 765
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 602, 720
DpnII GATC 2 cut(s) 600, 718
DraIII CACNNNGTG 1 cut(s) 611
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 293, 751
FaeI CATG 3 cut(s) 280, 505, 668
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 276, 501, 664
Fnu4HI GCNGC 2 cut(s) 564, 567
FokI GGATG 3 cut(s) 264, 509, 521
Fsp4HI GCNGC 2 cut(s) 564, 567
FspBI CTAG 2 cut(s) 471, 716
GluI GCNGC 2 cut(s) 564, 567
HaeIII GGCC 1 cut(s) 300
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 349
Hin1II CATG 3 cut(s) 280, 505, 668
HinfI GANTC 5 cut(s) 89, 146, 265, 778, 784
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 274, 439, 635
Hpy188I TCNGA 6 cut(s) 63, 151, 312, 353, 770, 783
Hpy188III TCNNGA 2 cut(s) 176, 665
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 5 cut(s) 173, 456, 499, 656, 735
HpyCH4III ACNGT 3 cut(s) 49, 213, 317
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 6 cut(s) 4, 70, 133, 190, 569, 660
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 230, 451, 476, 611
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 3 cut(s) 280, 505, 668
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 600, 718
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 5 cut(s) 189, 323, 332, 565, 759
Lsp1109I GCAGC 2 cut(s) 550, 553
LweI GCATC 3 cut(s) 57, 487, 692
MaeI CTAG 2 cut(s) 471, 716
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 677
MalI GATC 2 cut(s) 602, 720
MboI GATC 2 cut(s) 600, 718
MboII GAAGA 2 cut(s) 391, 560
MfeI CAATTG 1 cut(s) 71
MluCI AATT 2 cut(s) 71, 669
MlyI GAGTC 2 cut(s) 98, 274
MmeI TCCRAC 2 cut(s) 331, 399
MnlI CCTC 8 cut(s) 186, 238, 366, 382, 469, 505, 508, 660
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 552, 697
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 623, 793
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 5 cut(s) 130, 230, 451, 476, 611
NdeII GATC 2 cut(s) 600, 718
NheI GCTAGC 1 cut(s) 470
NlaIII CATG 3 cut(s) 280, 505, 668
NmuCI GTSAC 1 cut(s) 677
OliI CACNNNNGTG 1 cut(s) 623
PagI TCATGA 1 cut(s) 664
PcsI WCGNNNNNNNCGW 1 cut(s) 357
PdmI GAANNNNTTC 2 cut(s) 552, 697
PfeI GAWTC 3 cut(s) 146, 778, 784
PkrI GCNGC 2 cut(s) 565, 568
PleI GAGTC 2 cut(s) 97, 273
PpsI GAGTC 2 cut(s) 97, 273
PstNI CAGNNNCTG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 2 cut(s) 623, 793
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 564, 567
Sau3AI GATC 2 cut(s) 600, 718
SchI GAGTC 2 cut(s) 98, 274
SfaNI GCATC 3 cut(s) 57, 487, 692
SmiMI CAYNNNNRTG 2 cut(s) 623, 793
Sse9I AATT 2 cut(s) 71, 669
SspMI CTAG 2 cut(s) 471, 716
TaaI ACNGT 3 cut(s) 49, 213, 317
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 363
TasI AATT 2 cut(s) 71, 669
TatI WGTACW 1 cut(s) 21
TfiI GAWTC 3 cut(s) 146, 778, 784
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 2 cut(s) 563, 566
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 7 cut(s) 18, 97, 265, 383, 446, 518, 681
TspRI CASTG 1 cut(s) 84
XapI RAATTY 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmnI GAANNNNTTC 2 cut(s) 552, 697
XspI CTAG 2 cut(s) 471, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.