pycom11g02090

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
1792099 .. 1793584
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
ATGACAAAAATTAAAAAGGCCACGGATCGAGAACTCACAACCGTCGATTCGTTTCGCTGCGTCCTCTCCCCGAAACTTTCACACGAAAACACAAAATTTCAAACTTCCCGCGATTCCTCTCCTCTCCAAATCGTAAATAAATACCCCCAAATCTTCCGCCACTTTCCATCCAATCGAAATCGATCAAATTTTCTCGAGAAACAAACACATCCTAAACCGTTCAACCTTCCACTTTCATTTTTCCAGATGGCTCGTACCAAGCAGACTGCTCGCAAGTCCACCGGAGGAAAGGCTCCAAGGAAGCAGCTGGCAACTAAGGCGGCTAGGAAGTCTGCTCCGGCGACCGGTGGAGTGAAGAAGCCCCACCGCTTCAGGCCGGGAACTGTGGCGCTGAGGGAAATCAGGAAGTACCAGAAGAGCACTGAGCTCCTGATCCGCAAGCTTCCGTTCCAGAGGCTTGTGAGGGAGATCGCACAGGACTTCAAGACCGATCTGAGGTTCCAGAGTAGCGCGGTGTCGGCGCTCCAGGAGGCGGCGGAGGCTTACTTGGTGGGTCTGTTTGAGGACACCAACCTCTGCGCTATTCATGCCAAGAGGGTCACCATAATGCCCAAGGACATCCAGCTTGCTCGCAGGATTAGGGGCGAGAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

219

Amino Acids

24.96

Weight (kDa)

11.02

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 126 - 213 2.3e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 111, 512
AciI CCGC 8 cut(s) 109, 157, 320, 367, 436, 512, 533, 536
AclWI GGATC 2 cut(s) 33, 427
AcsI RAATTY 2 cut(s) 95, 187
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 2 cut(s) 256, 410
AfiI CCNNNNNNNGG 3 cut(s) 344, 495, 532
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 3 cut(s) 101, 223, 484
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 4 cut(s) 307, 427, 442, 625
AluI AGCT 4 cut(s) 307, 427, 442, 625
Alw21I GWGCWC 2 cut(s) 422, 429
AlwI GGATC 2 cut(s) 33, 427
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 18, 374
ApeKI GCWGC 2 cut(s) 57, 304
ApoI RAATTY 2 cut(s) 95, 187
AsiGI ACCGGT 1 cut(s) 344
AspLEI GCGC 4 cut(s) 391, 512, 523, 581
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 194
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 422, 429
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 2 cut(s) 44, 316
BccI CCATC 2 cut(s) 175, 241
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 2 cut(s) 392, 524
BisI GCNGC 4 cut(s) 58, 305, 321, 534
BlsI GCNGC 4 cut(s) 59, 306, 322, 535
Bme1390I CCNGG 2 cut(s) 378, 527
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 294, 500
BmrFI CCNGG 2 cut(s) 378, 527
BpmI CTGGAG 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 21, 296, 612
BsaWI WCCGGW 2 cut(s) 281, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 495, 532
Bse118I RCCGGY 1 cut(s) 344
BseBI CCWGG 1 cut(s) 527
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 21, 296, 612
BseGI GGATG 3 cut(s) 167, 208, 618
BseLI CCNNNNNNNGG 3 cut(s) 344, 495, 532
BseMII CTCAG 3 cut(s) 383, 414, 485
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 44, 316
Bsh1236I CGCG 2 cut(s) 111, 512
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 20, 376
BshTI ACCGGT 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 422, 429
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 282, 338, 345, 377
BslI CCNNNNNNNGG 3 cut(s) 344, 495, 532
BsnI GGCC 2 cut(s) 20, 376
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 422, 429
Bsp143I GATC 5 cut(s) 25, 182, 432, 468, 490
BspACI CCGC 8 cut(s) 109, 157, 320, 367, 436, 512, 533, 536
BspANI GGCC 2 cut(s) 20, 376
BspCNI CTCAG 3 cut(s) 384, 415, 486
BspDI ATCGAT 1 cut(s) 181
BspFNI CGCG 2 cut(s) 111, 512
BspLI GGNNCC 2 cut(s) 294, 500
BspPI GGATC 2 cut(s) 33, 427
BspQI GCTCTTC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 3 cut(s) 21, 296, 612
BssMI GATC 5 cut(s) 25, 182, 432, 468, 490
BssT1I CCWWGG 2 cut(s) 296, 612
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 43, 219, 385
Bst6I CTCTTC 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 271, 309, 440, 627, 631
BstDEI CTNAG 4 cut(s) 315, 392, 423, 494
BstDSI CCRYGG 1 cut(s) 21
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 3 cut(s) 167, 208, 618
BstFNI CGCG 2 cut(s) 111, 512
BstH2I RGCGCY 2 cut(s) 392, 524
BstHHI GCGC 4 cut(s) 391, 512, 523, 581
BstKTI GATC 5 cut(s) 28, 185, 435, 471, 493
BstMBI GATC 5 cut(s) 25, 182, 432, 468, 490
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 317, 518, 539, 587
BstNI CCWGG 1 cut(s) 527
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 376, 525
BstUI CGCG 2 cut(s) 111, 512
BstV1I GCAGC 2 cut(s) 44, 316
Bsu15I ATCGAT 1 cut(s) 181
BsuRI GGCC 2 cut(s) 20, 376
BsuTUI ATCGAT 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 3 cut(s) 167, 208, 618
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 5 cut(s) 271, 309, 440, 627, 631
CfoI GCGC 4 cut(s) 391, 512, 523, 581
Cfr10I RCCGGY 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 181
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 255, 409
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 1 cut(s) 587
CviQI GTAC 2 cut(s) 255, 409
DdeI CTNAG 4 cut(s) 315, 392, 423, 494
DpnI GATC 5 cut(s) 27, 184, 434, 470, 492
DpnII GATC 5 cut(s) 25, 182, 432, 468, 490
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
EciI GGCGGA 2 cut(s) 146, 551
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 2 cut(s) 296, 612
Eco24I GRGCYC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 2 cut(s) 296, 612
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 2 cut(s) 296, 612
FaeI CATG 1 cut(s) 590
FaiI YATR 2 cut(s) 588, 605
FatI CATG 1 cut(s) 586
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 4 cut(s) 58, 305, 321, 534
FokI GGATG 3 cut(s) 154, 195, 605
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 4 cut(s) 58, 305, 321, 534
FspBI CTAG 1 cut(s) 324
GlaI GCGC 4 cut(s) 390, 511, 522, 580
GluI GCNGC 4 cut(s) 58, 305, 321, 534
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 2 cut(s) 392, 524
HaeIII GGCC 2 cut(s) 20, 376
HapII CCGG 4 cut(s) 282, 338, 345, 377
HgaI GACGC 1 cut(s) 49
HhaI GCGC 4 cut(s) 391, 512, 523, 581
Hin1II CATG 1 cut(s) 590
Hin6I GCGC 4 cut(s) 389, 510, 521, 579
HinP1I GCGC 4 cut(s) 389, 510, 521, 579
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 2 cut(s) 47, 113
HpaII CCGG 4 cut(s) 282, 338, 345, 377
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 9 cut(s) 29, 194, 196, 244, 403, 430, 451, 484, 502
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 3 cut(s) 43, 219, 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 518, 539, 587
HpyF3I CTNAG 4 cut(s) 315, 392, 423, 494
Hsp92II CATG 1 cut(s) 590
HspAI GCGC 4 cut(s) 389, 510, 521, 579
Kzo9I GATC 5 cut(s) 25, 182, 432, 468, 490
LguI GCTCTTC 1 cut(s) 410
LmnI GCTCC 4 cut(s) 298, 340, 432, 528
Lsp1109I GCAGC 2 cut(s) 44, 316
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 598
MalI GATC 5 cut(s) 27, 184, 434, 470, 492
MboI GATC 5 cut(s) 25, 182, 432, 468, 490
MboII GAAGA 3 cut(s) 145, 367, 427
MhlI GDGCHC 2 cut(s) 422, 429
MluCI AATT 3 cut(s) 9, 95, 187
MseI TTAA 2 cut(s) 12, 655
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 282, 338, 345, 377
MspR9I CCNGG 2 cut(s) 378, 527
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 111, 512
MwoI GCNNNNNNNGC 4 cut(s) 317, 518, 539, 587
NciI CCSGG 1 cut(s) 378
NdeII GATC 5 cut(s) 25, 182, 432, 468, 490
NlaIII CATG 1 cut(s) 590
NlaIV GGNNCC 2 cut(s) 294, 500
NmuCI GTSAC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 47, 113
PfoI TCCNGGA 1 cut(s) 525
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 4 cut(s) 59, 306, 322, 535
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 525
PspEI GGTNACC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 294, 500
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 2 cut(s) 256, 410
RsaNI GTAC 2 cut(s) 255, 409
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 12, 655
SatI GCNGC 4 cut(s) 58, 305, 321, 534
Sau3AI GATC 5 cut(s) 25, 182, 432, 468, 490
ScrFI CCNGG 2 cut(s) 378, 527
SduI GDGCHC 2 cut(s) 422, 429
SetI ASST 7 cut(s) 228, 309, 429, 444, 500, 576, 627
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 9, 95, 187
SsiI CCGC 8 cut(s) 109, 157, 320, 367, 436, 512, 533, 536
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 376, 525
StyI CCWWGG 2 cut(s) 296, 612
TaaI ACNGT 3 cut(s) 43, 219, 385
TaqI TCGA 5 cut(s) 28, 45, 175, 181, 195
TaqII GACCGA 1 cut(s) 503
TasI AATT 3 cut(s) 9, 95, 187
TauI GCSGC 2 cut(s) 323, 536
TfiI GAWTC 2 cut(s) 47, 113
Tru1I TTAA 2 cut(s) 12, 655
Tru9I TTAA 2 cut(s) 12, 655
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 57, 304
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 225, 575
TspGWI ACGGA 2 cut(s) 38, 435
TspRI CASTG 1 cut(s) 427
XapI RAATTY 2 cut(s) 95, 187
XhoI CTCGAG 1 cut(s) 194
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.