pycom11g02450

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
2055862 .. 2056939
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
ATGATAAAATTCCCAAATCTTTTTTTTTTTTTCCCGACATTCTGGATTTTGGGTTCTTCTTTGTTTCTCAAAATTTGCATAGAATCTCATCTGGGTTTTGTTCAAATTGATCAAAAAACCCAACTTCGGGTGACTATGAATCTGGAAATACTACATTATGTTCTGGACCATGTGTATGGTGCATTTATACAGAGAACAAAGAATAGCCCTTTTTCGAGAGGGTGGGGCGGGCGACAGGAAGGGGATGAACGTGGCGATGGTGATACGGTGGGGAGGAAGAACGGCACGGCTTGGAATTGGGAGGGTTTAGGGTTTTTCCCTTTCGATTTTTTAATAATTAGTTATAAGGATAAAGAAAGTGAATTAAAATGTGAGGGAGTATTAGATTTTTGTGTAATTAATCCAAGCTATGGAGCTAGAGAGAGAGATCGAAAGGTATATAGAGCGAAAGTGAATCTTGCACCTGAATCTTTCGATTTTTGCGCTCTTAATATTTATACTCGCACAACTCATAACAACCTTATACAAATCTCAACAGCCACTAATAACAAGACATGTGCCTCTTTGTGGGAATTCGAAGATCAATCAATCGTGTTCATTCATCATATATCGTGCAGCCTGTTTTCGATTTCTAACCGCACGATGTACGATGAACGGACACGATTAATTGATCATCAGACACGATTGATTGATTATCCGGAACCCCACAAAGAAAATCTGGAGAATATTCTATTCCAACTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

249

Amino Acids

28.97

Weight (kDa)

6.45

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 697
AciI CCGC 2 cut(s) 228, 637
AcsI RAATTY 3 cut(s) 8, 72, 572
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 4 cut(s) 126, 127, 410, 567
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 37, 69
AluBI AGCT 2 cut(s) 408, 416
AluI AGCT 2 cut(s) 408, 416
Aor13HI TCCGGA 1 cut(s) 697
ApeKI GCWGC 1 cut(s) 615
ApoI RAATTY 3 cut(s) 8, 72, 572
AseI ATTAAT 2 cut(s) 399, 665
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 142, 272
AsuII TTCGAA 1 cut(s) 576
AvaII GGWCC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 627
BccI CCATC 1 cut(s) 251
BceAI ACGGC 2 cut(s) 298, 303
BclI TGATCA 2 cut(s) 109, 670
BfaI CTAG 1 cut(s) 417
BisI GCNGC 1 cut(s) 616
BlsI GCNGC 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 576
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 127, 410, 567
BseAI TCCGGA 1 cut(s) 697
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 4 cut(s) 126, 127, 410, 567
BseXI GCAGC 1 cut(s) 627
BsgI GTGCAG 1 cut(s) 634
BsiSI CCGG 1 cut(s) 698
BslI CCNNNNNNNGG 4 cut(s) 126, 127, 410, 567
Bsp119I TTCGAA 1 cut(s) 576
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 4 cut(s) 109, 427, 580, 670
BspACI CCGC 2 cut(s) 228, 637
BspEI TCCGGA 1 cut(s) 697
BspLI GGNNCC 1 cut(s) 702
BspT104I TTCGAA 1 cut(s) 576
BssMI GATC 4 cut(s) 109, 427, 580, 670
Bst4CI ACNGT 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 4 cut(s) 112, 430, 583, 673
BstMBI GATC 4 cut(s) 109, 427, 580, 670
BstNSI RCATGY 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 646
CviAII CATG 2 cut(s) 170, 555
CviJI RGCY 6 cut(s) 207, 290, 408, 416, 539, 618
CviKI_1 RGCY 6 cut(s) 207, 290, 408, 416, 539, 618
CviQI GTAC 1 cut(s) 646
DpnI GATC 4 cut(s) 111, 429, 582, 672
DpnII GATC 4 cut(s) 109, 427, 580, 670
Eco47I GGWCC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 572
FaeI CATG 2 cut(s) 173, 558
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 169, 554
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 2 cut(s) 109, 670
Fnu4HI GCNGC 1 cut(s) 616
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 616
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 740
HapII CCGG 1 cut(s) 698
HhaI GCGC 1 cut(s) 485
Hin1II CATG 2 cut(s) 173, 558
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 4 cut(s) 83, 139, 454, 467
HpaII CCGG 1 cut(s) 698
HphI GGTGA 2 cut(s) 142, 272
Hpy188I TCNGA 1 cut(s) 678
Hpy188III TCNNGA 7 cut(s) 34, 43, 143, 164, 216, 698, 719
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 78, 182, 461, 615
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 173, 558
HspAI GCGC 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 697
Ksp22I TGATCA 2 cut(s) 109, 670
Kzo9I GATC 4 cut(s) 109, 427, 580, 670
LmnI GCTCC 1 cut(s) 413
LpnPI CCDG 9 cut(s) 28, 77, 128, 149, 221, 477, 632, 704, 711
Lsp1109I GCAGC 1 cut(s) 627
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 130
MalI GATC 4 cut(s) 111, 429, 582, 672
MboI GATC 4 cut(s) 109, 427, 580, 670
MboII GAAGA 3 cut(s) 48, 289, 590
MluCI AATT 9 cut(s) 8, 72, 105, 295, 336, 362, 396, 572, 666
MnlI CCTC 5 cut(s) 212, 267, 295, 367, 571
MroI TCCGGA 1 cut(s) 697
MseI TTAA 5 cut(s) 332, 365, 399, 489, 665
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 698
NdeII GATC 4 cut(s) 109, 427, 580, 670
NlaIII CATG 2 cut(s) 173, 558
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 558
NspV TTCGAA 1 cut(s) 576
PciI ACATGT 1 cut(s) 554
PfeI GAWTC 4 cut(s) 83, 139, 454, 467
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 1 cut(s) 617
PscI ACATGT 1 cut(s) 554
PshBI ATTAAT 2 cut(s) 399, 665
PsiI TTATAA 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 5 cut(s) 332, 365, 399, 489, 665
SatI GCNGC 1 cut(s) 616
Sau3AI GATC 4 cut(s) 109, 427, 580, 670
Sau96I GGNCC 1 cut(s) 166
SetI ASST 6 cut(s) 253, 410, 418, 438, 466, 522
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 9 cut(s) 8, 72, 105, 295, 336, 362, 396, 572, 666
SsiI CCGC 2 cut(s) 228, 637
SspI AATATT 2 cut(s) 493, 727
SspMI CTAG 1 cut(s) 417
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 253
TaqI TCGA 6 cut(s) 215, 324, 430, 474, 576, 626
TasI AATT 9 cut(s) 8, 72, 105, 295, 336, 362, 396, 572, 666
TfiI GAWTC 4 cut(s) 83, 139, 454, 467
Tru1I TTAA 5 cut(s) 332, 365, 399, 489, 665
Tru9I TTAA 5 cut(s) 332, 365, 399, 489, 665
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 615
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 5 cut(s) 152, 261, 586, 590, 666
TspGWI ACGGA 1 cut(s) 670
Van91I CCANNNNNTGG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 166
VspI ATTAAT 2 cut(s) 399, 665
XapI RAATTY 3 cut(s) 8, 72, 572
XceI RCATGY 1 cut(s) 558
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.