Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2094771 .. 2096173

Gene Structure 1403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTCGTGGGTTTTTCAGCCTCGACGGAGGGGAGCACGGAGATTCATCTGGTTGAGAATTGGAGTTTCATACCTTCGGGTTGTTGCGAAAATGCCGAGGTTGCAGCCACACAATGTGTCCGATACTTATGTGCATCACCGACGGCTCGGTTTGGGACTCGGGATTGCTGGGCCAGCGATCTTTTGCGTGGCGCTAGTGGTTTTCGGTTATGTTTCCGTGATGAAATGGATGGAGGTGAGAAAACAGAAGAGCTTCAAAGCAAAGGTGGTGGCAGGGAGGGTTTCATCCCAGTAGGATTCTTGGGCATGGAGCTTTTGGGACTGTTTACAAGGCGTTTTTTGTGTCTTCAGGCACCATTTCTGCGTCCTCTGAGTTGGCGACTATTGCTTGCTTGCGTCACAAGAATGAGGTTCGCCTTCAAGGCTGGTGCGTTGAGAAGGGTGAATAGCTTCTTGTTTACGATTTCATGCCTAATGGGAGCCTCGAAAAGGCGCTGTACCAAGAATCTGTACAAGGTACCTTATCTGCATCAGGAATGTGAGCAGCAGGTCATCCACAGAGACATAAAGACTGGAAATGTGTTGCTTGATGGGAATTTAAACGCGAGGCTCAGTGATTTCGGGCTGGCAAAGCGGTACCTTGCGCCTAAGTATCTTCAATATGGAAAAGCAACCAAAAAGACTGATGCTTTTAGCTATGGTGTGGTGATCCTTGAAGTAGCGTGTGGAAGGAGGCCAATAGAAAAAGAGCCGGGAAGTGAGAAGGCGGTGAATTTGGTTGATTGGGTTTGGGATGCATTCCGAAGGGAGGATTATCGAGAAATGAGAAATCTGTTGCTTGTCGGATTAAGTTGTGCTAACCCTGATAACGCGGAGAGGCCTACGATGAGGAGGGTTCTGCAGATTCTGAGCAATGAGGCAGAAATTCAAGCCGTCCCAAGGGTGAAGCCGAGTCTGAGTTTCTCTAACAGATTGCCTTTGTCCCTTGATGACATTGTTTCGGATTGTGAGGAGGATTCCAATATCTTCGATTCTTTTAACTTTACCACTGCCTTTTTATTTTTTGTTTTTTTTTTTTTTTTTAATCCTGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

366

Amino Acids

41.33

Weight (kDa)

8.5

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	173 - 301	5.4e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	212 - 302	6.8e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
Acc65I	GGTACC	2 cut(s)	517, 636
AccB1I	GGYRCC	3 cut(s)	352, 517, 636
AccII	CGCG	2 cut(s)	605, 872
AciI	CCGC	3 cut(s)	634, 767, 872
AclWI	GGATC	1 cut(s)	703
AcsI	RAATTY	3 cut(s)	595, 772, 924
AcuI	CTGAAG	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	499, 512, 519, 638
AfiI	CCNNNNNNNGG	3 cut(s)	489, 808, 939
AgsI	TTSAA	5 cut(s)	257, 421, 659, 716, 929
AluBI	AGCT	4 cut(s)	253, 313, 450, 696
AluI	AGCT	4 cut(s)	253, 313, 450, 696
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	3 cut(s)	171, 734, 878
ApeKI	GCWGC	2 cut(s)	104, 544
ApoI	RAATTY	3 cut(s)	595, 772, 924
Asp700I	GAANNNNTTC	2 cut(s)	252, 449
Asp718I	GGTACC	2 cut(s)	517, 636
AspLEI	GCGC	3 cut(s)	194, 495, 646
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	6 cut(s)	129, 248, 454, 718, 781, 955
AvaI	CYCGRG	1 cut(s)	159
BaeI	ACNNNNGTAYC	2 cut(s)	115, 148
BanI	GGYRCC	3 cut(s)	352, 517, 636
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	116, 556
BccI	CCATC	2 cut(s)	224, 584
BceAI	ACGGC	2 cut(s)	159, 917
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	2 cut(s)	899, 1089
BfoI	RGCGCY	2 cut(s)	195, 496
BfuAI	ACCTGC	1 cut(s)	538
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	105, 545
BlsI	GCNGC	2 cut(s)	106, 546
Bme1390I	CCNGG	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	4 cut(s)	354, 481, 519, 638
BmrFI	CCNGG	1 cut(s)	753
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	4 cut(s)	143, 538, 676, 784
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	753
BsaJI	CCNNGG	2 cut(s)	96, 938
Bsc4I	CCNNNNNNNGG	3 cut(s)	489, 808, 939
Bse1I	ACTGG	2 cut(s)	290, 577
Bse3DI	GCAATG	1 cut(s)	919
BseDI	CCNNGG	2 cut(s)	96, 938
BseGI	GGATG	4 cut(s)	235, 285, 552, 799
BseLI	CCNNNNNNNGG	3 cut(s)	489, 808, 939
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	4 cut(s)	362, 625, 899, 947
BseNI	ACTGG	2 cut(s)	290, 577
BseRI	GAGGAG	2 cut(s)	904, 1025
BseXI	GCAGC	2 cut(s)	116, 556
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	605, 872
BshFI	GGCC	3 cut(s)	173, 736, 880
BshNI	GGYRCC	3 cut(s)	352, 517, 636
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	752
BslFI	GGGAC	4 cut(s)	169, 333, 920, 967
BslI	CCNNNNNNNGG	3 cut(s)	489, 808, 939
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	4 cut(s)	169, 333, 920, 967
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	3 cut(s)	173, 736, 880
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	178, 708
BspACI	CCGC	3 cut(s)	634, 767, 872
BspANI	GGCC	3 cut(s)	173, 736, 880
BspCNI	CTCAG	4 cut(s)	363, 624, 900, 948
BspFNI	CGCG	2 cut(s)	605, 872
BspLI	GGNNCC	4 cut(s)	354, 481, 519, 638
BspMAI	CTGCAG	1 cut(s)	903
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	3 cut(s)	352, 517, 636
BsrDI	GCAATG	1 cut(s)	919
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	290, 577
BssECI	CCNNGG	2 cut(s)	96, 938
BssMI	GATC	2 cut(s)	178, 708
BssT1I	CCWWGG	1 cut(s)	938
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	4 cut(s)	175, 390, 394, 627
BstDEI	CTNAG	5 cut(s)	371, 611, 648, 908, 956
BstENI	CCTNNNNNAGG	1 cut(s)	487
BstF5I	GGATG	4 cut(s)	235, 285, 552, 799
BstFNI	CGCG	2 cut(s)	605, 872
BstH2I	RGCGCY	2 cut(s)	195, 496
BstHHI	GCGC	3 cut(s)	194, 495, 646
BstKTI	GATC	2 cut(s)	181, 711
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	2 cut(s)	178, 708
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 174, 385, 422, 631
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	899, 1089
BstUI	CGCG	2 cut(s)	605, 872
BstV1I	GCAGC	2 cut(s)	116, 556
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	173, 736, 880
BtsCI	GGATG	4 cut(s)	235, 285, 552, 799
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	2 cut(s)	619, 1047
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	4 cut(s)	175, 390, 394, 627
CaiI	CAGNNNCTG	1 cut(s)	907
CfoI	GCGC	3 cut(s)	194, 495, 646
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	2 cut(s)	353, 385
Csp6I	GTAC	4 cut(s)	498, 511, 518, 637
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	2 cut(s)	307, 468
CviQI	GTAC	4 cut(s)	498, 511, 518, 637
DdeI	CTNAG	5 cut(s)	371, 611, 648, 908, 956
DpnI	GATC	2 cut(s)	180, 710
DpnII	GATC	2 cut(s)	178, 708
DraI	TTTAAA	1 cut(s)	600
DraIII	CACNNNGTG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	938
Eco147I	AGGCCT	1 cut(s)	880
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	938
EcoT22I	ATGCAT	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	938
FaeI	CATG	2 cut(s)	310, 471
FaiI	YATR	8 cut(s)	71, 130, 211, 308, 469, 566, 663, 699
FaqI	GGGAC	4 cut(s)	169, 333, 920, 967
FatI	CATG	2 cut(s)	306, 467
Fnu4HI	GCNGC	2 cut(s)	105, 545
FokI	GGATG	4 cut(s)	242, 272, 539, 806
Fsp4HI	GCNGC	2 cut(s)	105, 545
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	3 cut(s)	193, 494, 645
GluI	GCNGC	2 cut(s)	105, 545
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	2 cut(s)	195, 496
HaeIII	GGCC	3 cut(s)	173, 736, 880
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	2 cut(s)	353, 385
HhaI	GCGC	3 cut(s)	194, 495, 646
Hin1II	CATG	2 cut(s)	310, 471
Hin6I	GCGC	3 cut(s)	192, 493, 644
HinP1I	GCGC	3 cut(s)	192, 493, 644
HinfI	GANTC	8 cut(s)	43, 157, 297, 505, 904, 952, 1016, 1031
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	6 cut(s)	129, 248, 454, 718, 781, 955
Hpy166II	GTNNAC	2 cut(s)	327, 459
Hpy188I	TCNGA	7 cut(s)	122, 372, 803, 845, 909, 957, 1003
Hpy188III	TCNNGA	3 cut(s)	161, 533, 818
Hpy8I	GTNNAC	2 cut(s)	327, 459
Hpy99I	CGWCG	2 cut(s)	28, 145
HpyAV	CCTTC	6 cut(s)	84, 427, 432, 723, 757, 798
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	104, 134, 529, 797, 901
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 174, 385, 422, 631
HpyF3I	CTNAG	5 cut(s)	371, 611, 648, 908, 956
Hsp92II	CATG	2 cut(s)	310, 471
HspAI	GCGC	3 cut(s)	192, 493, 644
KpnI	GGTACC	2 cut(s)	521, 640
Kzo9I	GATC	2 cut(s)	178, 708
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	33, 310, 479
Lsp1109I	GCAGC	2 cut(s)	116, 556
LweI	GCATC	4 cut(s)	143, 538, 676, 784
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	180, 710
MboI	GATC	2 cut(s)	178, 708
MboII	GAAGA	4 cut(s)	260, 338, 647, 1018
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	58, 595, 772, 924
MlyI	GAGTC	2 cut(s)	151, 961
MmeI	TCCRAC	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	799
MroXI	GAANNNNTTC	2 cut(s)	252, 449
MseI	TTAA	4 cut(s)	599, 848, 1038, 1083
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	797
MvnI	CGCG	2 cut(s)	605, 872
MwoI	GCNNNNNNNGC	5 cut(s)	101, 174, 385, 422, 631
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	2 cut(s)	178, 708
NlaIII	CATG	2 cut(s)	310, 471
NlaIV	GGNNCC	4 cut(s)	354, 481, 519, 638
NmeAIII	GCCGAG	2 cut(s)	121, 975
NmuCI	GTSAC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	2 cut(s)	252, 449
PfeI	GAWTC	6 cut(s)	43, 297, 505, 904, 1016, 1031
PkrI	GCNGC	2 cut(s)	106, 546
PleI	GAGTC	2 cut(s)	151, 960
PpsI	GAGTC	2 cut(s)	151, 960
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	4 cut(s)	354, 481, 519, 638
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	903
PstNI	CAGNNNCTG	1 cut(s)	907
RsaI	GTAC	4 cut(s)	499, 512, 519, 638
RsaNI	GTAC	4 cut(s)	498, 511, 518, 637
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	599, 848, 1038, 1083
SatI	GCNGC	2 cut(s)	105, 545
Sau3AI	GATC	2 cut(s)	178, 708
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	151, 961
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	4 cut(s)	143, 538, 676, 784
SfcI	CTRYAG	2 cut(s)	899, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	4 cut(s)	58, 595, 772, 924
SseBI	AGGCCT	1 cut(s)	880
SsiI	CCGC	3 cut(s)	634, 767, 872
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	880
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	938
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	23, 485, 817, 1029
TasI	AATT	4 cut(s)	58, 595, 772, 924
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	6 cut(s)	43, 297, 505, 904, 1016, 1031
Tru1I	TTAA	4 cut(s)	599, 848, 1038, 1083
Tru9I	TTAA	4 cut(s)	599, 848, 1038, 1083
TscAI	CASTG	2 cut(s)	619, 1054
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	104, 544
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	35, 58, 237, 274, 456
TspGWI	ACGGA	3 cut(s)	41, 53, 206
TspRI	CASTG	2 cut(s)	619, 1054
XagI	CCTNNNNNAGG	1 cut(s)	487
XapI	RAATTY	3 cut(s)	595, 772, 924
XmnI	GAANNNNTTC	2 cut(s)	252, 449
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.