Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2139879 .. 2140709

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGATAGAAGTTGAAGGACCAATAGCTTCTAATCCACCGATGGAGCTTGGGATGGATTTCATGCGTGAGGGGATGGATGAAGGTAATGTATTACACAACATTGATCAAATTGAGATGTCTTTTCGTGTTGAGAATAGGGCAGATGATGACATGGACATGGCTGATTTAGAAAATGACATGGGTGATGATGGTGAGGATGATGAGGATGATGATGAGGGAGAGGATGAGGATGAGGATATAGCAGAGGACGGTGGTGGCATGATGTCACTTGCTGATACTGATGTGGAAGACCATGATGATACCGGCTTGGGAGATGGTTACAATGATGGGATGATTGATGAAGATGATGATGATTTTCATGAGAATCGTGTCATAGAAGTGAGATGGAGAGAAGCCCTTGATGGGCTTGATCATTTGCAGGTACTTGGACAACCTGGACCTGGAAGTGGTCTCATTGATGTTGCTGCTGAACCTTTTGAAGGTGTTAATGTGGATGACTTGTTTGCTCTGAGAGGGCCGATAGGTTTTGATCGATGCCATCAGACAAGTAGGTCTTCCTTTGAGCGATCTGGTGCAGAAGCAAATGGATTTCAACATCCTCTCCTTTTAAGACCATCCCAGTCTGGGGATTTGGTCTCAATGTGGTCAGCAGGTGGAAATTCATCCAGGGATTTAGAAGCTCTGTCATCAGGGAGCTTTGATGTTGCTCATTTCTACATGTTTGATGCTCCTGTTCTACCTTATCGATCACGTACCAAGCAATCTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

259

Amino Acids

28.55

Weight (kDa)

4.05

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
AasI	GACNNNNNNGTC	1 cut(s)	553
Acc36I	ACCTGC	2 cut(s)	412, 644
AcsI	RAATTY	1 cut(s)	661
AfaI	GTAC	2 cut(s)	426, 757
AfiI	CCNNNNNNNGG	6 cut(s)	405, 443, 449, 482, 627, 628
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	17, 482, 596
AjnI	CCWGG	3 cut(s)	436, 442, 668
AluBI	AGCT	4 cut(s)	29, 49, 683, 699
AluI	AGCT	4 cut(s)	29, 49, 683, 699
Alw26I	GTCTC	2 cut(s)	458, 643
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	661
AspS9I	GGNCC	3 cut(s)	20, 440, 518
AsuHPI	GGTGA	2 cut(s)	197, 206
AvaII	GGWCC	2 cut(s)	20, 440
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BbsI	GAAGAC	2 cut(s)	297, 549
BbvI	GCAGC	1 cut(s)	454
BciT130I	CCWGG	3 cut(s)	438, 444, 670
BclI	TGATCA	2 cut(s)	106, 412
BcoDI	GTCTC	2 cut(s)	458, 643
BfuAI	ACCTGC	2 cut(s)	412, 644
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	3 cut(s)	438, 444, 670
Bme18I	GGWCC	2 cut(s)	20, 440
BmgT120I	GGNCC	3 cut(s)	20, 440, 518
BmrFI	CCNGG	3 cut(s)	438, 444, 670
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	527, 718
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	297, 549
Bsa29I	ATCGAT	2 cut(s)	535, 748
BsaAI	YACGTR	1 cut(s)	755
BsaI	GGTCTC	2 cut(s)	458, 643
BsaJI	CCNNGG	1 cut(s)	669
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	6 cut(s)	405, 443, 449, 482, 627, 628
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	438, 444, 670
BseCI	ATCGAT	2 cut(s)	535, 748
BseDI	CCNNGG	1 cut(s)	669
BseLI	CCNNNNNNNGG	6 cut(s)	405, 443, 449, 482, 627, 628
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	520
BshVI	ATCGAT	2 cut(s)	535, 748
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	6 cut(s)	405, 443, 449, 482, 627, 628
BsmAI	GTCTC	2 cut(s)	458, 643
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	2 cut(s)	458, 643
Bsp143I	GATC	5 cut(s)	106, 412, 532, 569, 749
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	504
BspDI	ATCGAT	2 cut(s)	535, 748
BspHI	TCATGA	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	412, 644
BspTNI	GGTCTC	2 cut(s)	458, 643
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	5 cut(s)	106, 412, 532, 569, 749
Bst2UI	CCWGG	3 cut(s)	438, 444, 670
Bst4CI	ACNGT	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	755
BstDEI	CTNAG	1 cut(s)	512
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstKTI	GATC	5 cut(s)	109, 415, 535, 572, 752
BstMAI	GTCTC	2 cut(s)	458, 643
BstMBI	GATC	5 cut(s)	106, 412, 532, 569, 749
BstNI	CCWGG	3 cut(s)	438, 444, 670
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	436, 442, 668
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	2 cut(s)	297, 549
Bsu15I	ATCGAT	2 cut(s)	535, 748
BsuRI	GGCC	1 cut(s)	520
BsuTUI	ATCGAT	2 cut(s)	535, 748
BveI	ACCTGC	2 cut(s)	412, 644
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	20, 440, 518
ClaI	ATCGAT	2 cut(s)	535, 748
Csp6I	GTAC	2 cut(s)	425, 756
CviAII	CATG	8 cut(s)	64, 154, 160, 181, 262, 296, 362, 721
CviJI	RGCY	9 cut(s)	29, 49, 164, 309, 398, 409, 520, 683, 699
CviKI_1	RGCY	9 cut(s)	29, 49, 164, 309, 398, 409, 520, 683, 699
CviQI	GTAC	2 cut(s)	425, 756
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	5 cut(s)	108, 414, 534, 571, 751
DpnII	GATC	5 cut(s)	106, 412, 532, 569, 749
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
Eco31I	GGTCTC	2 cut(s)	458, 643
Eco47I	GGWCC	2 cut(s)	20, 440
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRII	CCWGG	3 cut(s)	436, 442, 668
FaeI	CATG	8 cut(s)	67, 157, 163, 184, 265, 299, 365, 724
FalI	AAGNNNNNCTT	2 cut(s)	541, 573
FatI	CATG	8 cut(s)	63, 153, 159, 180, 261, 295, 361, 720
FbaI	TGATCA	2 cut(s)	106, 412
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	8 cut(s)	67, 157, 163, 184, 265, 299, 365, 724
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	197, 206
Hpy188I	TCNGA	2 cut(s)	513, 546
Hpy188III	TCNNGA	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	11, 77, 476
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	754
HpyCH4V	TGCA	2 cut(s)	421, 578
HpyF3I	CTNAG	1 cut(s)	512
HpySE526I	ACGT	1 cut(s)	754
Hsp92II	CATG	8 cut(s)	67, 157, 163, 184, 265, 299, 365, 724
Ksp22I	TGATCA	2 cut(s)	106, 412
Kzo9I	GATC	5 cut(s)	106, 412, 532, 569, 749
LmnI	GCTCC	3 cut(s)	46, 696, 736
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	2 cut(s)	527, 718
MaeII	ACGT	1 cut(s)	754
MaeIII	GTNAC	2 cut(s)	267, 320
MalI	GATC	5 cut(s)	108, 414, 534, 571, 751
MboI	GATC	5 cut(s)	106, 412, 532, 569, 749
MboII	GAAGA	3 cut(s)	302, 356, 549
MluCI	AATT	2 cut(s)	111, 661
MseI	TTAA	2 cut(s)	489, 611
MslI	CAYNNNNRTG	2 cut(s)	158, 380
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	438, 444, 670
MvaI	CCWGG	3 cut(s)	438, 444, 670
NdeII	GATC	5 cut(s)	106, 412, 532, 569, 749
NlaIII	CATG	8 cut(s)	67, 157, 163, 184, 265, 299, 365, 724
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	724
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	644
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	755
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	3 cut(s)	436, 442, 668
PspGI	CCWGG	3 cut(s)	436, 442, 668
PspPI	GGNCC	3 cut(s)	20, 440, 518
RsaI	GTAC	2 cut(s)	426, 757
RsaNI	GTAC	2 cut(s)	425, 756
RseI	CAYNNNNRTG	2 cut(s)	158, 380
SaqAI	TTAA	2 cut(s)	489, 611
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	5 cut(s)	106, 412, 532, 569, 749
Sau96I	GGNCC	3 cut(s)	20, 440, 518
ScrFI	CCNGG	3 cut(s)	438, 444, 670
SfaNI	GCATC	2 cut(s)	527, 718
SinI	GGWCC	2 cut(s)	20, 440
SmiMI	CAYNNNNRTG	2 cut(s)	158, 380
Sse9I	AATT	2 cut(s)	111, 661
StyD4I	CCNGG	3 cut(s)	436, 442, 668
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	757
TaqI	TCGA	2 cut(s)	535, 748
TasI	AATT	2 cut(s)	111, 661
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	2 cut(s)	489, 611
Tru9I	TTAA	2 cut(s)	489, 611
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	5 cut(s)	52, 96, 350, 357, 654
VpaK11BI	GGWCC	2 cut(s)	20, 440
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.