Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2781138 .. 2782311

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGTTCAGTCACGTGATCGATCACTATACAATCAAAGGGGGTGGTTCCCAAGGACTTGGAGCAGCTGAAGATTGGATATCAAAAGGGAAGCTTCGTAGTCAACTTGTTACGAGTCCGAAGCATGAAGCTTTTATGCTTGGAACTACGAAGGCTAGACCAGACAACAAAGAATTTGAGCTTGTTATCACAACTGCACCAATACCAGATTTAAATGATAAGCTAATTGTATTCGGACGGGTCATCAAAGGAGAGGAAGTGGTACAGAGTAAATTTGGAGAAGCACAAGCCAAAAAGCAAAGCAGTGCTGCATATAAATCCAAATTTGATAGAAGTAAGAGACAGAGTTATCACCAAAGAAAAACCAAAGGATCCAATTCCAGAAATCAAGTGGGGTGTATAGATGTCGTAGTTGATCACTCGTCGTCGGAGTGTGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

148

Amino Acids

16.24

Weight (kDa)

9.37

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	2 - 90	8.5e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	366, 379
AcsI	RAATTY	3 cut(s)	173, 272, 323
AcuI	CTGAAG	1 cut(s)	90
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	264
AluBI	AGCT	5 cut(s)	68, 94, 131, 181, 223
AluI	AGCT	5 cut(s)	68, 94, 131, 181, 223
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	366, 379
ApeKI	GCWGC	2 cut(s)	65, 308
ApoI	RAATTY	3 cut(s)	173, 272, 323
AsuHPI	GGTGA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	77, 295
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	66, 309
BlsI	GCNGC	2 cut(s)	67, 310
BmiI	GGNNCC	2 cut(s)	49, 373
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	77, 295
BsgI	GTGCAG	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	18, 22, 371, 415
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	49, 373
BspPI	GGATC	2 cut(s)	366, 379
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	18, 22, 371, 415
BssT1I	CCWWGG	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	16
BstKTI	GATC	4 cut(s)	21, 25, 374, 418
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	18, 22, 371, 415
BstV1I	GCAGC	2 cut(s)	77, 295
BstX2I	RGATCY	1 cut(s)	371
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	371
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	7 cut(s)	68, 94, 131, 155, 181, 223, 290
CviKI_1	RGCY	7 cut(s)	68, 94, 131, 155, 181, 223, 290
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	4 cut(s)	20, 24, 373, 417
DpnII	GATC	4 cut(s)	18, 22, 371, 415
DraI	TTTAAA	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	90
Eco72I	CACGTG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	128
FaiI	YATR	6 cut(s)	30, 126, 137, 313, 315, 401
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	66, 309
Fsp4HI	GCNGC	2 cut(s)	66, 309
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	66, 309
Hin1II	CATG	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HindIII	AAGCTT	2 cut(s)	92, 129
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	120, 236, 430
Hpy188III	TCNNGA	1 cut(s)	381
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	2 cut(s)	427, 430
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	197, 311
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	18, 22, 371, 415
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	3 cut(s)	174, 219, 394
Lsp1109I	GCAGC	2 cut(s)	77, 295
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	11, 109, 434
MalI	GATC	4 cut(s)	20, 24, 373, 417
MboI	GATC	4 cut(s)	18, 22, 371, 415
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	1 cut(s)	371
MluCI	AATT	5 cut(s)	173, 225, 272, 323, 376
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	68
NdeII	GATC	4 cut(s)	18, 22, 371, 415
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	49, 373
NmuCI	GTSAC	2 cut(s)	11, 434
PkrI	GCNGC	2 cut(s)	67, 310
PleI	GAGTC	1 cut(s)	123
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	16
PspCI	CACGTG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	49, 373
PsuI	RGATCY	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	2 cut(s)	66, 309
Sau3AI	GATC	4 cut(s)	18, 22, 371, 415
SchI	GAGTC	1 cut(s)	124
SetI	ASST	6 cut(s)	18, 70, 96, 133, 183, 225
SmiI	ATTTAAAT	1 cut(s)	213
Sse9I	AATT	5 cut(s)	173, 225, 272, 323, 376
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	52
SwaI	ATTTAAAT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	173, 225, 272, 323, 376
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	11, 434
TseI	GCWGC	2 cut(s)	65, 308
Tsp45I	GTSAC	2 cut(s)	11, 434
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	3 cut(s)	173, 272, 323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.