Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3351879 .. 3355525

Gene Structure 3647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGAGTCGGAGGCGGCGGCGGTCGTCGAGGATGTGAAAAAGCACCCCGAGGCGGCGACCAGCGGAATGGTGCTGCGGAGGCGGCTGCAGCTGATGATGTACAACAACATGTACAGAATCATGTTCGACCGGCGATTCGAGAGCGAGGAGGATCCCCTGTTCGTGAAGCTCAAGGCGCTGAATGGGGAGAGGAGCCGATTGGCGCAGAGCTTCGACTACAACTACGGCGATTTTATCCCGATCTTAAGGCCCTTTTTGAGAGGGTATTTGAAGATCTGCAAGGAAGTGAAGGAGAAGAGCGATCCAGCTGTTTAAGGACTATTTCGTGGACGAGAGGAAGTAAGAAACTTTCGAGCACAAAGCCTACAACAAACGAAGGGTTGAAATGCGCCATCGACCACATCCTCGACGCGCAGCAGAAAGGAGAAATCAACGAGGACAACGTTCTCTACATCGTCGAGAACATCAACGTTGCTGCTATTGAGACCACATTGTGGTCGATCGAGTGGGGAATTGCCGAGCTAGTGAACCATCCCGAAATCCAGAAAAAGCTGAGGAATGAACTTGACACAGTCCTTGGCCGCGGAGTTCAGATCACAGAGCCCGACGTTCATAAACTTCCCTACCTGCAAGCCGTGGTCAAGGAGACTCTCCGACTTCGCATGGCAATCCCACTCCTTGTCCCCCACATGAACCTCCAGGATGCCAAGCTCGGCGGGTTTGATATTCCGGCGGAGAGCAAGATACTGGTGAATGCTTGGTGGTTGGCAAACAACCCTGCCCTGTGGAAGAAGCCAGAAGAGTTTAGGCCCGAGAGGTTTTTGGAGGAGGAGTCGAAGGTGGAGGCTAACGGGAACGACTTCAGGTATCTCCCGTTTGGTGTTGGGAGGAGAAGTTGTCCTGGGATTATTTTGGCCCTGCCAATCCTGGGCATTACAATTGGACGTTTAGTCCAGAACTTCGAGCTTCTGCCTCCGCCAGGACAGTCCAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGCCTGCACATCCTGAAGCACTCCACCATTGTGATGAAGCCGAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009808 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0016710 GO:0019748 GO:0044237 GO:0044550 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 ko01220 map00130 map00360 map00940 map00941 map00945 map01100 map01110 map01220

Pfam Domains

Protein Families

p450

Protein Analysis

358

Amino Acids

39.67

Weight (kDa)

6.49

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	115 - 349	3.3e-70	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	495
AccII	CGCG	2 cut(s)	413, 585
AclI	AACGTT	2 cut(s)	444, 471
AclWI	GGATC	3 cut(s)	147, 160, 297
AcoI	YGGCCR	1 cut(s)	580
AcuI	CTGAAG	2 cut(s)	847, 1058
AdeI	CACNNNGTG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	102, 114
AfiI	CCNNNNNNNGG	4 cut(s)	53, 495, 929, 980
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	272, 385
AhdI	GACNNNNNGTC	1 cut(s)	950
AjnI	CCWGG	4 cut(s)	699, 901, 927, 979
AleI	CACNNNNGTG	1 cut(s)	1052
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	9 cut(s)	92, 170, 211, 309, 523, 553, 712, 967, 994
AluI	AGCT	9 cut(s)	92, 170, 211, 309, 523, 553, 712, 967, 994
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	479, 641
AlwI	GGATC	3 cut(s)	147, 160, 297
Ama87I	CYCGRG	2 cut(s)	48, 812
AoxI	GGCC	4 cut(s)	249, 580, 809, 915
ApeKI	GCWGC	5 cut(s)	74, 86, 89, 415, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	4 cut(s)	179, 206, 392, 415
AspS9I	GGNCC	3 cut(s)	250, 810, 916
AsuHPI	GGTGA	1 cut(s)	763
AvaI	CYCGRG	2 cut(s)	48, 812
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	554
BbvI	GCAGC	5 cut(s)	61, 73, 101, 427, 463
BccI	CCATC	2 cut(s)	401, 540
BceAI	ACGGC	2 cut(s)	242, 620
BciT130I	CCWGG	4 cut(s)	701, 903, 929, 981
BcoDI	GTCTC	2 cut(s)	479, 641
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	636
BglII	AGATCT	1 cut(s)	274
Bme1390I	CCNGG	4 cut(s)	701, 903, 929, 981
BmeRI	GACNNNNNGTC	1 cut(s)	950
BmeT110I	CYCGRG	2 cut(s)	48, 812
BmgT120I	GGNCC	3 cut(s)	250, 810, 916
BmiI	GGNNCC	2 cut(s)	154, 195
BmrFI	CCNGG	4 cut(s)	701, 903, 929, 981
BmsI	GCATC	1 cut(s)	694
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	8 cut(s)	49, 577, 583, 636, 902, 928, 1002, 1064
BsaXI	ACNNNNNCTCC	6 cut(s)	818, 848, 880, 883, 910, 913
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 495, 929, 980
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	753
BseBI	CCWGG	4 cut(s)	701, 903, 929, 981
BseDI	CCNNGG	8 cut(s)	49, 577, 583, 636, 902, 928, 1002, 1064
BseGI	GGATG	5 cut(s)	38, 402, 532, 709, 1032
BseLI	CCNNNNNNNGG	4 cut(s)	53, 495, 929, 980
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	753
BseRI	GAGGAG	5 cut(s)	162, 206, 842, 845, 904
BseXI	GCAGC	5 cut(s)	61, 73, 101, 427, 463
BsgI	GTGCAG	1 cut(s)	1013
Bsh1236I	CGCG	2 cut(s)	413, 585
Bsh1285I	CGRYCG	3 cut(s)	25, 131, 504
BshFI	GGCC	4 cut(s)	251, 582, 811, 917
BsiEI	CGRYCG	3 cut(s)	25, 131, 504
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	2 cut(s)	48, 812
BsiSI	CCGG	2 cut(s)	131, 731
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	4 cut(s)	53, 495, 929, 980
BsmAI	GTCTC	2 cut(s)	479, 641
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	251, 582, 811, 917
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	2 cut(s)	48, 812
Bsp1286I	GDGCHC	2 cut(s)	359, 606
Bsp1407I	TGTACA	2 cut(s)	100, 112
Bsp143I	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
BspANI	GGCC	4 cut(s)	251, 582, 811, 917
BspCNI	CTCAG	1 cut(s)	546
BspFNI	CGCG	2 cut(s)	413, 585
BspLI	GGNNCC	2 cut(s)	154, 195
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	3 cut(s)	147, 160, 297
BspQI	GCTCTTC	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	130
BsrGI	TGTACA	2 cut(s)	100, 112
BsrI	ACTGG	1 cut(s)	753
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	8 cut(s)	49, 577, 583, 636, 902, 928, 1002, 1064
BssMI	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	4 cut(s)	701, 903, 929, 981
Bst4CI	ACNGT	3 cut(s)	574, 987, 1020
Bst6I	CTCTTC	2 cut(s)	291, 795
BstAFI	CTTAAG	1 cut(s)	245
BstAUI	TGTACA	2 cut(s)	100, 112
BstC8I	GCNNGC	2 cut(s)	633, 1028
BstDEI	CTNAG	1 cut(s)	554
BstDSI	CCRYGG	2 cut(s)	583, 636
BstENI	CCTNNNNNAGG	1 cut(s)	978
BstF5I	GGATG	5 cut(s)	38, 402, 532, 709, 1032
BstFNI	CGCG	2 cut(s)	413, 585
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	4 cut(s)	179, 206, 392, 415
BstKTI	GATC	6 cut(s)	155, 244, 277, 305, 504, 597
BstMAI	GTCTC	2 cut(s)	479, 641
BstMBI	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
BstMCI	CGRYCG	3 cut(s)	25, 131, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 176
BstNI	CCWGG	4 cut(s)	701, 903, 929, 981
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	4 cut(s)	699, 901, 927, 979
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	2 cut(s)	413, 585
BstV1I	GCAGC	5 cut(s)	61, 73, 101, 427, 463
BstX2I	RGATCY	2 cut(s)	152, 274
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	2 cut(s)	152, 274
BsuRI	GGCC	4 cut(s)	251, 582, 811, 917
BtgI	CCRYGG	2 cut(s)	583, 636
BtsCI	GGATG	5 cut(s)	38, 402, 532, 709, 1032
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	633, 1028
CfoI	GCGC	4 cut(s)	179, 206, 392, 415
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	250, 810, 916
Cfr42I	CCGCGG	1 cut(s)	586
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	101, 113
CviAII	CATG	4 cut(s)	110, 122, 664, 691
CviQI	GTAC	2 cut(s)	101, 113
DdeI	CTNAG	1 cut(s)	554
DpnI	GATC	6 cut(s)	154, 243, 276, 304, 503, 596
DpnII	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
DraIII	CACNNNGTG	1 cut(s)	495
DriI	GACNNNNNGTC	1 cut(s)	950
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	2 cut(s)	291, 795
Eam1105I	GACNNNNNGTC	1 cut(s)	950
EarI	CTCTTC	2 cut(s)	291, 795
EciI	GGCGGA	2 cut(s)	749, 966
Eco130I	CCWWGG	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	847, 1058
Eco88I	CYCGRG	2 cut(s)	48, 812
EcoNI	CCTNNNNNAGG	1 cut(s)	978
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	4 cut(s)	699, 901, 927, 979
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	4 cut(s)	113, 125, 667, 694
FaiI	YATR	5 cut(s)	111, 123, 615, 665, 692
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	4 cut(s)	109, 121, 663, 690
FauI	CCCGC	1 cut(s)	710
FokI	GGATG	5 cut(s)	45, 389, 519, 716, 1019
FriOI	GRGCYC	1 cut(s)	606
FspBI	CTAG	1 cut(s)	524
GlaI	GCGC	4 cut(s)	178, 205, 391, 414
GsuI	CTGGAG	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	251, 582, 811, 917
HapII	CCGG	2 cut(s)	131, 731
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	4 cut(s)	179, 206, 392, 415
Hin1II	CATG	4 cut(s)	113, 125, 667, 694
Hin6I	GCGC	4 cut(s)	177, 204, 390, 413
HinP1I	GCGC	4 cut(s)	177, 204, 390, 413
HinfI	GANTC	5 cut(s)	6, 118, 136, 649, 833
HpaII	CCGG	2 cut(s)	131, 731
HphI	GGTGA	1 cut(s)	763
Hpy166II	GTNNAC	3 cut(s)	330, 529, 1016
Hpy188I	TCNGA	4 cut(s)	11, 594, 656, 1006
Hpy188III	TCNNGA	8 cut(s)	140, 164, 239, 460, 536, 544, 955, 1036
Hpy8I	GTNNAC	3 cut(s)	330, 529, 1016
Hpy99I	CGWCG	4 cut(s)	30, 413, 461, 611
HpyAV	CCTTC	3 cut(s)	284, 371, 832
HpyCH4III	ACNGT	3 cut(s)	574, 987, 1020
HpyCH4IV	ACGT	4 cut(s)	444, 471, 609, 946
HpyCH4V	TGCA	4 cut(s)	89, 280, 631, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 176
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	4 cut(s)	444, 471, 609, 946
Hsp92II	CATG	4 cut(s)	113, 125, 667, 694
HspAI	GCGC	4 cut(s)	177, 204, 390, 413
KspI	CCGCGG	1 cut(s)	586
Kzo9I	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	5 cut(s)	61, 73, 101, 427, 463
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	4 cut(s)	444, 471, 609, 946
MalI	GATC	6 cut(s)	154, 243, 276, 304, 503, 596
MboI	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
MboII	GAAGA	4 cut(s)	284, 308, 802, 812
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	152, 274
MhlI	GDGCHC	2 cut(s)	359, 606
MluCI	AATT	2 cut(s)	513, 939
MlyI	GAGTC	3 cut(s)	15, 643, 842
MmeI	TCCRAC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	2 cut(s)	246, 314
MslI	CAYNNNNRTG	2 cut(s)	1052, 1055
MspA1I	CMGCKG	4 cut(s)	64, 92, 309, 585
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	131, 731
MspR9I	CCNGG	4 cut(s)	701, 903, 929, 981
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	4 cut(s)	701, 903, 929, 981
MvnI	CGCG	2 cut(s)	413, 585
MwoI	GCNNNNNNNGC	4 cut(s)	80, 83, 89, 176
NdeII	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
NlaIII	CATG	4 cut(s)	113, 125, 667, 694
NlaIV	GGNNCC	2 cut(s)	154, 195
NmeAIII	GCCGAG	2 cut(s)	544, 693
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	1052
PciI	ACATGT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	2 cut(s)	118, 136
PflFI	GACNNNGTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	495
PfoI	TCCNGGA	1 cut(s)	699
Ple19I	CGATCG	1 cut(s)	504
PleI	GAGTC	3 cut(s)	14, 643, 841
PpsI	GAGTC	3 cut(s)	14, 643, 841
PscI	ACATGT	1 cut(s)	109
Psp1406I	AACGTT	2 cut(s)	444, 471
Psp6I	CCWGG	4 cut(s)	699, 901, 927, 979
PspGI	CCWGG	4 cut(s)	699, 901, 927, 979
PspN4I	GGNNCC	2 cut(s)	154, 195
PspPI	GGNCC	3 cut(s)	250, 810, 916
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	152, 274
PsyI	GACNNNGTC	1 cut(s)	572
PvuI	CGATCG	1 cut(s)	504
PvuII	CAGCTG	2 cut(s)	92, 309
RsaI	GTAC	2 cut(s)	102, 114
RsaNI	GTAC	2 cut(s)	101, 113
RseI	CAYNNNNRTG	2 cut(s)	1052, 1055
SacII	CCGCGG	1 cut(s)	586
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	246, 314
Sau3AI	GATC	6 cut(s)	152, 241, 274, 302, 501, 594
Sau96I	GGNCC	3 cut(s)	250, 810, 916
SchI	GAGTC	3 cut(s)	15, 643, 842
ScrFI	CCNGG	4 cut(s)	701, 903, 929, 981
SduI	GDGCHC	2 cut(s)	359, 606
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	87
Sfr303I	CCGCGG	1 cut(s)	586
SgrBI	CCGCGG	1 cut(s)	586
SmiMI	CAYNNNNRTG	2 cut(s)	1052, 1055
SmlI	CTYRAG	2 cut(s)	171, 245
SmoI	CTYRAG	2 cut(s)	171, 245
Sse9I	AATT	2 cut(s)	513, 939
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	4 cut(s)	699, 901, 927, 979
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	3 cut(s)	574, 987, 1020
TaiI	ACGT	4 cut(s)	447, 474, 612, 949
TasI	AATT	2 cut(s)	513, 939
TatI	WGTACW	2 cut(s)	100, 112
TauI	GCSGC	5 cut(s)	18, 21, 57, 86, 585
TfiI	GAWTC	2 cut(s)	118, 136
Tru1I	TTAA	2 cut(s)	246, 314
Tru9I	TTAA	2 cut(s)	246, 314
TseI	GCWGC	5 cut(s)	74, 86, 89, 415, 476
TspDTI	ATGAA	4 cut(s)	576, 602, 707, 1073
Tth111I	GACNNNGTC	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	495
Vha464I	CTTAAG	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	978
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.