Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4383666 .. 4385517

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATACGGAGGTGGCGGTGGCGGTGGGTGTGGGTGTGGGGAGTAATAATGGTGGGGGTAGTGAGGAAATGTTGATCCGGATGAAGCAGCGGCTTGTTTCGCAGGTGTTGGAAATCGGGATTATTTTCCACTCGGTGATAATTGGGGTGACGATGGGGATGTCGCAGAACCAGTGCACCATCCGGCCGCTGGTCGCTGCGCTGTCGTTTCATCAGATTTTCGAAGGGATGGGACTCGGGGGATGCATTGCTCAGGCAGGATTTAAGTTCGGGACAACAGCCTACATGTGCTTCATGTTTGCAGTGACAACACCAATGGGGATAGTATTGGGTATGATCTTGTTCTCGGTGACAGGTTACGATGATAGTAACCCTAATGCCCTAATCTTGGAGGGTTTGTTAGGGTCGTTCTCCTCGGGCATACTTATCTACATGGCTCTGGTCGATCTCATAGCTCTGGATTTCTTCCACAACAAGATGATGAGCTCCAATTCATGGATGCGAAAAACATCGTACATCGCTCTTGTTCTTGGCTCTACCTCTATGTCCATCCTTGCCCTTTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043207 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

190

Amino Acids

20.2

Weight (kDa)

5.46

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	28 - 186	1.6e-45	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	4 cut(s)	17, 23, 91, 188
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	3 cut(s)	190, 388, 495
AflIII	ACRYGT	1 cut(s)	285
AluBI	AGCT	2 cut(s)	455, 486
AluI	AGCT	2 cut(s)	455, 486
Alw21I	GWGCWC	2 cut(s)	179, 488
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	2 cut(s)	236, 415
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	88, 197
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	148, 160, 361
AsuII	TTCGAA	1 cut(s)	222
AvaI	CYCGRG	2 cut(s)	236, 415
BaeGI	GKGCMC	1 cut(s)	179
BaeI	ACNNNNGTAYC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	179, 488
BbvI	GCAGC	2 cut(s)	100, 184
BccI	CCATC	4 cut(s)	148, 188, 223, 557
BfuAI	ACCTGC	1 cut(s)	94
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	89, 92, 188, 198
BlsI	GCNGC	4 cut(s)	90, 93, 189, 199
BmeT110I	CYCGRG	2 cut(s)	236, 415
BmsI	GCATC	2 cut(s)	233, 489
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 388, 495
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	7 cut(s)	87, 165, 180, 234, 248, 504, 549
BseLI	CCNNNNNNNGG	3 cut(s)	190, 388, 495
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	100, 184
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	2 cut(s)	179, 488
BsiHKCI	CYCGRG	2 cut(s)	236, 415
BsiSI	CCGG	2 cut(s)	79, 184
BslFI	GGGAC	2 cut(s)	246, 286
BslI	CCNNNNNNNGG	3 cut(s)	190, 388, 495
BsmFI	GGGAC	2 cut(s)	246, 286
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	236, 415
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	179, 488
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	75, 336, 445
BspACI	CCGC	4 cut(s)	17, 23, 91, 188
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	75, 336, 445
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	7 cut(s)	87, 165, 180, 234, 248, 504, 549
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	78, 339, 448
BstMBI	GATC	3 cut(s)	75, 336, 445
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 563
BstNSI	RCATGY	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	100, 184
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	502
BtsCI	GGATG	7 cut(s)	87, 165, 180, 234, 248, 504, 549
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	179, 309
BveI	ACCTGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	4 cut(s)	286, 295, 433, 495
CviJI	RGCY	7 cut(s)	94, 187, 281, 437, 455, 486, 534
CviKI_1	RGCY	7 cut(s)	94, 187, 281, 437, 455, 486, 534
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	77, 338, 447
DpnII	GATC	3 cut(s)	75, 336, 445
DraIII	CACNNNGTG	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	486
EclXI	CGGCCG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	488
Eco52I	CGGCCG	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	486
Eco88I	CYCGRG	2 cut(s)	236, 415
EcoICRI	GAGCTC	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	4 cut(s)	289, 298, 436, 498
FaiI	YATR	9 cut(s)	287, 296, 335, 422, 434, 452, 496, 545, 568
FaqI	GGGAC	2 cut(s)	246, 286
FatI	CATG	4 cut(s)	285, 294, 432, 494
Fnu4HI	GCNGC	4 cut(s)	89, 92, 188, 198
FokI	GGATG	7 cut(s)	94, 167, 172, 241, 255, 511, 536
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	89, 92, 188, 198
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	89, 92, 188, 198
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	2 cut(s)	79, 184
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	289, 298, 436, 498
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	79, 184
HphI	GGTGA	3 cut(s)	148, 160, 361
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	4 cut(s)	79, 118, 271, 458
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	177, 246, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 563
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	289, 298, 436, 498
HspAI	GCGC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	75, 336, 445
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	2 cut(s)	100, 184
LweI	GCATC	2 cut(s)	233, 489
MaeIII	GTNAC	5 cut(s)	148, 304, 349, 356, 368
MalI	GATC	3 cut(s)	77, 338, 447
MboI	GATC	3 cut(s)	75, 336, 445
MboII	GAAGA	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	179, 488
MluCI	AATT	2 cut(s)	141, 490
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	4, 58, 385, 424, 550
Mph1103I	ATGCAT	1 cut(s)	248
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	91, 190
MspI	CCGG	2 cut(s)	79, 184
MwoI	GCNNNNNNNGC	2 cut(s)	100, 563
NdeII	GATC	3 cut(s)	75, 336, 445
NlaIII	CATG	4 cut(s)	289, 298, 436, 498
NmuCI	GTSAC	3 cut(s)	148, 304, 349
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	94
PciI	ACATGT	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	495
PkrI	GCNGC	4 cut(s)	90, 93, 189, 199
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	488
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	89, 92, 188, 198
Sau3AI	GATC	3 cut(s)	75, 336, 445
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	179, 488
SetI	ASST	6 cut(s)	15, 108, 358, 457, 488, 542
SfaNI	GCATC	2 cut(s)	233, 489
SfuI	TTCGAA	1 cut(s)	222
Sse9I	AATT	2 cut(s)	141, 490
SsiI	CCGC	4 cut(s)	17, 23, 91, 188
SstI	GAGCTC	1 cut(s)	488
TaqI	TCGA	2 cut(s)	222, 444
TasI	AATT	2 cut(s)	141, 490
TauI	GCSGC	2 cut(s)	94, 190
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	179, 309
TseFI	GTSAC	3 cut(s)	148, 304, 349
TseI	GCWGC	2 cut(s)	88, 197
Tsp45I	GTSAC	3 cut(s)	148, 304, 349
TspDTI	ATGAA	4 cut(s)	98, 200, 283, 483
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	179, 309
Van91I	CCANNNNNTGG	1 cut(s)	495
VneI	GTGCAC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.