pycom11g06210

nudC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
4782653 .. 4783172
520 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGCCGAGAAATTGGCACCGGAGAAGCGCCATAGCTTCGTTCACAATGGTCAGAAGGTGTTTGAATGGGACCAAACCCTAGAGGAGGTAAATATGTACATAAATTTACCCCCAAATGTTCCTTCAAAGCAATTTTACTGCAAAATTCAGTCGAAGCACGTCGAACTCGGCATCAAAGGCAATCCTCCGTACCTCAATCATGACCTTACCTGCCCAGTGAAGACGGACTGTTCTTTCTGGACACTAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS

Protein Analysis

84

Amino Acids

9.62

Weight (kDa)

6.89

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 21 - 82 3.4e-15 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 103, 144
AfaI GTAC 2 cut(s) 98, 191
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 65, 126
AjiI CACGTC 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 103, 144
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 227
BfaI CTAG 2 cut(s) 80, 245
BfoI RGCGCY 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 18, 71
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 98
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 96
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 18, 71
BspMI ACCTGC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 218
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 97, 190
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 5, 36
CviKI_1 RGCY 2 cut(s) 5, 36
CviQI GTAC 2 cut(s) 97, 190
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 83
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 33, 95, 101, 201
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 199
FspBI CTAG 2 cut(s) 80, 245
GlaI GCGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 200, 238
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 49, 132
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 33, 223, 223, 228
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 80, 245
MaeII ACGT 1 cut(s) 159
MboII GAAGA 1 cut(s) 232
MluCI AATT 4 cut(s) 11, 103, 131, 144
MnlI CCTC 4 cut(s) 76, 79, 195, 203
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 177
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 18, 71
NmeAIII GCCGAG 2 cut(s) 31, 147
PagI TCATGA 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 18, 71
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 2 cut(s) 98, 191
RsaNI GTAC 2 cut(s) 97, 190
Sau96I GGNCC 1 cut(s) 70
SetI ASST 7 cut(s) 38, 60, 90, 162, 195, 207, 212
SfaNI GCATC 1 cut(s) 180
SgeI CNNG 8 cut(s) 19, 32, 92, 170, 179, 212, 222, 227
SinI GGWCC 1 cut(s) 70
Sse9I AATT 4 cut(s) 11, 103, 131, 144
SspMI CTAG 2 cut(s) 80, 245
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 152, 162
TasI AATT 4 cut(s) 11, 103, 131, 144
TatI WGTACW 1 cut(s) 96
TscAI CASTG 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 177, 239
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 103, 144
XspI CTAG 2 cut(s) 80, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.